protocols::rosetta_scripts::ParsedProtocol Member List

This is the complete list of members for protocols::rosetta_scripts::ParsedProtocol, including all inherited members.

add_step(protocols::moves::MoverOP mover, std::string const &mover_name, protocols::filters::FilterOP filter, bool const report_filter_at_end=false)	protocols::rosetta_scripts::ParsedProtocol
add_step(ParsedProtocolStep const &step)	protocols::rosetta_scripts::ParsedProtocol
add_values_to_job(Pose const &pose, protocols::jd2::Job &) const override	protocols::rosetta_scripts::ParsedProtocol	virtual
apply(Pose &pose) override	protocols::rosetta_scripts::ParsedProtocol	virtual
apply_filter(Pose &pose, ParsedProtocolStep const &step)	protocols::rosetta_scripts::ParsedProtocol	private
apply_metrics(Pose &pose, ParsedProtocolStep const &step)	protocols::rosetta_scripts::ParsedProtocol	private
apply_mover(Pose &pose, ParsedProtocolStep const &step)	protocols::rosetta_scripts::ParsedProtocol	private
apply_probability(utility::vector1< core::Real > const &a)	protocols::rosetta_scripts::ParsedProtocol
apply_probability()	protocols::rosetta_scripts::ParsedProtocol
apply_probability_	protocols::rosetta_scripts::ParsedProtocol	private
apply_step(Pose &pose, ParsedProtocolStep const &step, bool skip_mover=false)	protocols::rosetta_scripts::ParsedProtocol	private
begin()	protocols::rosetta_scripts::ParsedProtocol
begin() const	protocols::rosetta_scripts::ParsedProtocol
call_order() const	protocols::rosetta_scripts::ParsedProtocol	inline
call_order_	protocols::rosetta_scripts::ParsedProtocol	private
clear()	protocols::rosetta_scripts::ParsedProtocol	inline
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::rosetta_scripts::ParsedProtocol	virtual
const_iterator typedef	protocols::rosetta_scripts::ParsedProtocol
create()	protocols::moves::Mover	virtual
end()	protocols::rosetta_scripts::ParsedProtocol
end() const	protocols::rosetta_scripts::ParsedProtocol
final_score(core::pose::Pose &pose) const	protocols::rosetta_scripts::ParsedProtocol
final_scorefxn(core::scoring::ScoreFunctionCOP scorefxn)	protocols::rosetta_scripts::ParsedProtocol
final_scorefxn() const	protocols::rosetta_scripts::ParsedProtocol
final_scorefxn_	protocols::rosetta_scripts::ParsedProtocol	private
finish_protocol(Pose &pose)	protocols::rosetta_scripts::ParsedProtocol	private
fresh_instance() const override	protocols::rosetta_scripts::ParsedProtocol	inlinevirtual
get_additional_output() override	protocols::rosetta_scripts::ParsedProtocol	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_mover(core::Size const mover_number) const	protocols::rosetta_scripts::ParsedProtocol	inline
get_name() const override	protocols::rosetta_scripts::ParsedProtocol	virtual
get_native_pose() const	protocols::moves::Mover
get_resid(core::pose::Pose const &) const	protocols::moves::ResId	virtual
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_step(core::Size const step_number) const	protocols::rosetta_scripts::ParsedProtocol	inline
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
iterator typedef	protocols::rosetta_scripts::ParsedProtocol
last_attempted_mover_idx()	protocols::rosetta_scripts::ParsedProtocol	inline
last_attempted_mover_idx(core::Size const s)	protocols::rosetta_scripts::ParsedProtocol	inline
last_attempted_mover_idx_	protocols::rosetta_scripts::ParsedProtocol	private
last_mover_	protocols::rosetta_scripts::ParsedProtocol	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
mode() const	protocols::rosetta_scripts::ParsedProtocol	inline
mode_	protocols::rosetta_scripts::ParsedProtocol	private
modifiable() const	protocols::moves::ResId
modifiable(bool const u)	protocols::moves::ResId
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::rosetta_scripts::ParsedProtocol	static
n_steps_passed_in_previous_run() const	protocols::rosetta_scripts::ParsedProtocol	inline
n_steps_passed_in_previous_run_	protocols::rosetta_scripts::ParsedProtocol	private
name()	protocols::moves::Mover	inlinestatic
parse_my_tag(utility::tag::TagCOP, basic::datacache::DataMap &) override	protocols::rosetta_scripts::ParsedProtocol	virtual
ParsedProtocol()	protocols::rosetta_scripts::ParsedProtocol
ParsedProtocolStepVector typedef	protocols::rosetta_scripts::ParsedProtocol
Pose typedef	protocols::rosetta_scripts::ParsedProtocol
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const override	protocols::rosetta_scripts::ParsedProtocol	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::rosetta_scripts::ParsedProtocol	static
random_order_protocol(Pose &pose)	protocols::rosetta_scripts::ParsedProtocol	private
random_single_protocol(Pose &pose)	protocols::rosetta_scripts::ParsedProtocol	private
Real typedef	protocols::rosetta_scripts::ParsedProtocol
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
report_all(Pose const &pose) const	protocols::rosetta_scripts::ParsedProtocol
report_call_order() const	protocols::rosetta_scripts::ParsedProtocol	inline
report_call_order(bool const c)	protocols::rosetta_scripts::ParsedProtocol	inline
report_call_order_	protocols::rosetta_scripts::ParsedProtocol	private
report_filters_to_pose(Pose &pose) const	protocols::rosetta_scripts::ParsedProtocol
reset_status()	protocols::moves::Mover
ResId()=default	protocols::moves::ResId
ResId(core::Size const r)	protocols::moves::ResId
resume_support_	protocols::rosetta_scripts::ParsedProtocol	private
sequence_protocol(Pose &pose, ParsedProtocolStepVector::const_iterator mover_it_in)	protocols::rosetta_scripts::ParsedProtocol	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_resid(core::Size const resid) override	protocols::rosetta_scripts::ParsedProtocol	virtual
set_resid(core::pose::ResidueIndexDescriptionCOP r) override	protocols::rosetta_scripts::ParsedProtocol	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
size()	protocols::rosetta_scripts::ParsedProtocol	inline
steps_	protocols::rosetta_scripts::ParsedProtocol	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
~JobOutputterObserver()=default	protocols::jd2::JobOutputterObserver	virtual
~ParsedProtocol() override	protocols::rosetta_scripts::ParsedProtocol
~ResId()=default	protocols::moves::ResId	virtual