| atom_types_ | protocols::sewing::hashing::LigandBindingResPlacer | private |
| best_geometry_score_ | protocols::sewing::hashing::LigandBindingResPlacer | private |
| best_rotamer_for_residue(std::pair< core::Size, core::Size > res, std::set< LigandCoordInfo > res_coord, data_storage::SmartAssemblyOP assembly) | protocols::sewing::hashing::LigandBindingResPlacer | |
| choose_best_metal_coordinator(data_storage::SmartAssemblyOP assembly) | protocols::sewing::hashing::LigandBindingResPlacer | |
| contacts_remaining() const | protocols::sewing::hashing::LigandBindingResPlacer | |
| contacts_to_make_ | protocols::sewing::hashing::LigandBindingResPlacer | private |
| define_ideal_contacts_subelement(utility::tag::XMLSchemaSimpleSubelementList &subs, utility::tag::XMLSchemaDefinition &xsd) | protocols::sewing::hashing::LigandBindingResPlacer | static |
| generate_ligand_key(numeric::xyzVector< core::Real >) | protocols::sewing::hashing::LigandBindingResPlacer | static |
| geometry_score_weight_ | protocols::sewing::hashing::LigandBindingResPlacer | private |
| get_best_geometry_score() const | protocols::sewing::hashing::LigandBindingResPlacer | |
| get_geometry_score_weight() const | protocols::sewing::hashing::LigandBindingResPlacer | |
| get_ligand() const | protocols::sewing::hashing::LigandBindingResPlacer | |
| get_ligand_local_coords() const | protocols::sewing::hashing::LigandBindingResPlacer | |
| get_possible_coordinations() const | protocols::sewing::hashing::LigandBindingResPlacer | |
| identify_possible_binders(data_storage::SmartAssemblyCOP assembly) | protocols::sewing::hashing::LigandBindingResPlacer | |
| last_contact_added_ | protocols::sewing::hashing::LigandBindingResPlacer | private |
| ligand_ | protocols::sewing::hashing::LigandBindingResPlacer | private |
| ligand_local_coords_ | protocols::sewing::hashing::LigandBindingResPlacer | private |
| ligand_subtag_ct_namer(std::string tag) | protocols::sewing::hashing::LigandBindingResPlacer | static |
| LigandBindingResPlacer() | protocols::sewing::hashing::LigandBindingResPlacer | |
| LigandBindingResPlacer(utility::pointer::shared_ptr< std::map< char, LigandHashMap > > coords, data_storage::LigandResidueOP ligand_residue) | protocols::sewing::hashing::LigandBindingResPlacer | |
| make_aligned_residue(data_storage::SmartSewingResidueOP, std::string) | protocols::sewing::hashing::LigandBindingResPlacer | |
| parse_ideal_contacts(utility::tag::TagCOP tag, utility::vector1< data_storage::LigandDescription > &ligands) | protocols::sewing::hashing::LigandBindingResPlacer | static |
| parse_ligand_files(utility::vector1< data_storage::LigandDescription > &ligands) | protocols::sewing::hashing::LigandBindingResPlacer | static |
| possible_coordinations_ | protocols::sewing::hashing::LigandBindingResPlacer | private |
| replace_chimaera_ligand_parent(data_storage::SmartAssemblyOP assembly, data_storage::SmartSegmentOP chimaeric_segment, data_storage::LigandSegmentOP replacement_ligseg, bool change_n_terminal_parent, bool first_basis_is_n_terminal, core::Size chimaeric_contact_resnum, utility::vector1< std::pair< std::pair< core::Size, core::Size >, std::pair< LigandCoordInfo, core::Real > > > res_scores) | protocols::sewing::hashing::LigandBindingResPlacer | |
| revert_last_added_contact(data_storage::SmartAssemblyOP assembly) | protocols::sewing::hashing::LigandBindingResPlacer | |
| set_best_geometry_score(core::Real) | protocols::sewing::hashing::LigandBindingResPlacer | |
| set_geometry_score_weight(core::Real) | protocols::sewing::hashing::LigandBindingResPlacer | |
| set_ligand(data_storage::LigandResidueOP lig) | protocols::sewing::hashing::LigandBindingResPlacer | |
| set_ligand_local_coords(utility::pointer::shared_ptr< std::map< char, LigandHashMap > > ligand_local_coords) | protocols::sewing::hashing::LigandBindingResPlacer | |
1.8.7