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core::pack::scmin::AtomTreeSCMinMinimizerMap Member List

This is the complete list of members for core::pack::scmin::AtomTreeSCMinMinimizerMap, including all inherited members.

activate_residue_dofs(Size resindex) overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
active_residue(Size index) const core::pack::scmin::AtomTreeSCMinMinimizerMapinline
active_residue_atom_to_dofnode_index_core::pack::scmin::AtomTreeSCMinMinimizerMapprivate
active_residue_index_for_res_core::pack::scmin::SCMinMinimizerMapprotected
active_residues_core::pack::scmin::SCMinMinimizerMapprotected
add_atom(AtomID const &atom_id, DOF_ID const &dof_id) overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
add_torsion(DOF_ID const &new_torsion, DOF_ID const &parent) overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
assign_dofs_to_mobile_residues(optimization::Multivec const &dofs) overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
atcs_for_residues_core::pack::scmin::AtomTreeSCMinMinimizerMapprivate
atom(AtomID const &atid) const overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
atom_derivatives(Size resid)core::pack::scmin::SCMinMinimizerMapinline
atom_derivatives_core::pack::scmin::SCMinMinimizerMapprotected
atom_tree_collection_core::pack::scmin::AtomTreeSCMinMinimizerMapprivate
AtomID typedefcore::kinematics::MinimizerMapBase
atoms_representing_chis_core::pack::scmin::AtomTreeSCMinMinimizerMapprivate
atoms_representing_ds_core::pack::scmin::AtomTreeSCMinMinimizerMapprivate
atoms_representing_thetas_core::pack::scmin::AtomTreeSCMinMinimizerMapprivate
AtomTreeSCMinMinimizerMap()core::pack::scmin::AtomTreeSCMinMinimizerMap
chi_start_for_active_residue_core::pack::scmin::AtomTreeSCMinMinimizerMapprivate
clear_active_dofs() overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
dm() const core::pack::scmin::AtomTreeSCMinMinimizerMapinline
DOF_ID typedefcore::kinematics::MinimizerMapBase
dof_mask_core::pack::scmin::AtomTreeSCMinMinimizerMapprivate
DOF_Node typedefcore::pack::scmin::AtomTreeSCMinMinimizerMap
dof_node(Size index) overridecore::pack::scmin::AtomTreeSCMinMinimizerMapinlinevirtual
dof_node_for_chi(Size resid, Size chiid) const overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
DOF_NodeOP typedefcore::pack::scmin::AtomTreeSCMinMinimizerMap
dof_nodes_core::pack::scmin::AtomTreeSCMinMinimizerMapprivate
dof_start_for_focused_residue_core::pack::scmin::AtomTreeSCMinMinimizerMapprivate
DOF_Type typedefcore::kinematics::MinimizerMapBase
domain_map() const overridecore::pack::scmin::AtomTreeSCMinMinimizerMapinlinevirtual
domain_map_core::pack::scmin::SCMinMinimizerMapprotected
focused_residue_core::pack::scmin::SCMinMinimizerMapprotected
link_torsion_vectors() overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
make_multifunc(pose::Pose &p, utility::vector1< conformation::ResidueCOP > const &bg_residues, scoring::ScoreFunction const &sfxn, scoring::MinimizationGraph &mingraph) overridecore::pack::scmin::AtomTreeSCMinMinimizerMapinlinevirtual
MinimizerMapBase()core::kinematics::MinimizerMapBase
n_active_dof_nodes_core::pack::scmin::AtomTreeSCMinMinimizerMapprivate
n_dof_nodes() const overridecore::pack::scmin::AtomTreeSCMinMinimizerMapinlinevirtual
nactive_residues() const core::pack::scmin::AtomTreeSCMinMinimizerMapinline
nactive_residues_core::pack::scmin::SCMinMinimizerMapprotected
ndofs_added_for_focused_residue_core::pack::scmin::AtomTreeSCMinMinimizerMapprivate
nonideal_core::pack::scmin::SCMinMinimizerMapprotected
reset_dof_nodes() overridecore::pack::scmin::AtomTreeSCMinMinimizerMapprotectedvirtual
residue(Size seqpos) const overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
residue_data(Size seqpos) const overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
SCMinMinimizerMap()core::pack::scmin::SCMinMinimizerMapinline
set_natoms_for_residue(Size resid, Size natoms) overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
set_nonideal(bool val_in)core::pack::scmin::SCMinMinimizerMapinline
set_total_residue(Size total_residue) overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
setup(AtomTreeCollectionOP trees) overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
starting_dofs(optimization::Multivec &dofs) const overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
tor_for_dof(id::DOF_ID const &dofid) const overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
zero_atom_derivative_vectors() overridecore::pack::scmin::AtomTreeSCMinMinimizerMapvirtual
~AtomTreeSCMinMinimizerMap() overridecore::pack::scmin::AtomTreeSCMinMinimizerMap
~MinimizerMapBase() overridecore::kinematics::MinimizerMapBase
~SCMinMinimizerMap() overridecore::pack::scmin::SCMinMinimizerMapinline
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