protocols::jd3::chunk_library_inputters Namespace Reference

Classes
class	ChunkLibraryInputSource
	The ChunkLibraryInputSource is a small class for holding data about the starting Pose for a Job and where it comes from (i.e. which of the ChunkLibraryInputters claims responsibility for creating a Pose for this instance). The "input_tag" is a string description of the input source and will be used as the "job_tag" to control output – the input tag should not include the file extension. It is perfectly reasonable for complex ChunkLibraryInputters to subclass from ChunkLibraryInputSource to tuck more complex data in the ChunkLibraryInputSource, though, the string-string map ought to provide considerable flexibility in storing data without deriving new subclasses. More...
class	ChunkLibraryInputter
	The ChunkLibraryInputter is responsible for reading from the command line a set of structures that are each to be run through a protocol, where each input struture will be the starting point for some number of jobs (where that number is at the JobQueen's discretion). The ChunkLibraryInputter is responsible for two things: More...
class	ChunkLibraryInputterCreator
class	ChunkLibraryInputterFactory
class	ChunkLibraryInputterRegistrator
	This templated class will register an instance of an ChunkLibraryInputterCreator (class T) with the ChunkLibraryInputterFactory. It will ensure that no ChunkLibraryInputterCreator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
class	PDBChunkLibraryInputter
	This is the simplest implementation of ChunkLibraryInputter, which reads from -s/-l and PDB files. More...
class	PDBChunkLibraryInputterCreator

Typedefs
typedef utility::pointer::shared_ptr < ChunkLibraryInputSource >	ChunkLibraryInputSourceOP
typedef utility::pointer::shared_ptr < ChunkLibraryInputSource const >	ChunkLibraryInputSourceCOP
typedef utility::vector1 < ChunkLibraryInputSourceOP >	ChunkLibraryInputSources
typedef utility::pointer::shared_ptr < ChunkLibraryInputter >	ChunkLibraryInputterOP
typedef utility::pointer::shared_ptr < ChunkLibraryInputter const >	ChunkLibraryInputterCOP
typedef utility::pointer::shared_ptr < ChunkLibraryInputterCreator >	ChunkLibraryInputterCreatorOP
typedef utility::pointer::shared_ptr < ChunkLibraryInputterCreator const >	ChunkLibraryInputterCreatorCOP
typedef utility::pointer::shared_ptr < PDBChunkLibraryInputter >	PDBChunkLibraryInputterOP
typedef utility::pointer::shared_ptr < PDBChunkLibraryInputter const >	PDBChunkLibraryInputterCOP

Functions
void	chunk_library_inputter_xsd_type_definition_w_attributes (utility::tag::XMLSchemaDefinition &xsd, std::string const &inputter_type, std::string const &description, utility::tag::AttributeList const &attributes)
	Define the XML schema definition for a ChunkLibraryInputter that contains no subtags but may contain any number of attributes (aka options). More...
static basic::Tracer	TR ("protocols.jd3.chunk_library_inputters.ChunkLibraryInputterFactory")

Typedef Documentation

typedef utility::pointer::shared_ptr< ChunkLibraryInputSource const > protocols::jd3::chunk_library_inputters::ChunkLibraryInputSourceCOP

typedef utility::pointer::shared_ptr< ChunkLibraryInputSource > protocols::jd3::chunk_library_inputters::ChunkLibraryInputSourceOP

typedef utility::vector1< ChunkLibraryInputSourceOP > protocols::jd3::chunk_library_inputters::ChunkLibraryInputSources

typedef utility::pointer::shared_ptr< ChunkLibraryInputter const > protocols::jd3::chunk_library_inputters::ChunkLibraryInputterCOP

typedef utility::pointer::shared_ptr< ChunkLibraryInputterCreator const > protocols::jd3::chunk_library_inputters::ChunkLibraryInputterCreatorCOP

typedef utility::pointer::shared_ptr< ChunkLibraryInputterCreator > protocols::jd3::chunk_library_inputters::ChunkLibraryInputterCreatorOP

typedef utility::pointer::shared_ptr< ChunkLibraryInputter > protocols::jd3::chunk_library_inputters::ChunkLibraryInputterOP

typedef utility::pointer::shared_ptr< PDBChunkLibraryInputter const > protocols::jd3::chunk_library_inputters::PDBChunkLibraryInputterCOP

typedef utility::pointer::shared_ptr< PDBChunkLibraryInputter > protocols::jd3::chunk_library_inputters::PDBChunkLibraryInputterOP

Function Documentation

void protocols::jd3::chunk_library_inputters::chunk_library_inputter_xsd_type_definition_w_attributes	(	utility::tag::XMLSchemaDefinition &	xsd,
		std::string const &	inputter_type,
		std::string const &	description,
		utility::tag::AttributeList const &	attributes
	)

Define the XML schema definition for a ChunkLibraryInputter that contains no subtags but may contain any number of attributes (aka options).

References protocols::jd3::chunk_library_inputters::ChunkLibraryInputterFactory::complex_type_name_for_chunk_library_inputter().

Referenced by protocols::jd3::chunk_library_inputters::PDBChunkLibraryInputter::provide_xml_schema().

static basic::Tracer protocols::jd3::chunk_library_inputters::TR ( "protocols.jd3.chunk_library_inputters.ChunkLibraryInputterFactory"  )

static

Referenced by protocols::jd3::chunk_library_inputters::ChunkLibraryInputterFactory::new_chunk_library_inputter().