core::id::NamedAtomID_Map_NamedAtomID Class Reference

#include <NamedAtomID_Map.hh>

Inheritance diagram for core::id::NamedAtomID_Map_NamedAtomID:

Additional Inherited Members
Public Types inherited from core::id::NamedAtomID_Map< NamedAtomID >
typedef std::map< std::string, NamedAtomID >	AtomMap
typedef utility::vector1< AtomMap >	ResidueMap
typedef NamedAtomID	value_type
typedef AtomMap::mapped_type	reference
typedef AtomMap::mapped_type const	const_reference
typedef AtomMap::size_type	size_type
typedef NamedAtomID	Value
typedef AtomMap::mapped_type	Reference
typedef AtomMap::mapped_type const	ConstReference
typedef platform::Size	Size
Public Member Functions inherited from core::id::NamedAtomID_Map< NamedAtomID >
	NamedAtomID_Map ()
	Default constructor with no arguments (PyRosetta workaround) More...
	NamedAtomID_Map (Value const &default_value_a)
	Default constructor. More...
	NamedAtomID_Map (Size const n_res)
	Number of residues constructor. More...
	NamedAtomID_Map (Size const n_res, Value const &default_value_a)
	Number of residues constructor. More...
	~NamedAtomID_Map ()=default
	Destructor. More...
void	resize (Size const n_res)
	Resize to a given number of residues. More...
void	resize (Size const, Size const )
	Resize the number of atoms of a residue and use the default fill value. More...
void	resize (Size const, Size const, Value const &)
	Resize the number of atoms of a residue and use a specified fill value. More...
void	fill ()
	Fill the map with the default fill value. More...
ConstReference	get (NamedAtomID const &id) const
	Get the value for an NamedAtomID: Return default value if not present Phil changing this to be a non-resizing function. More...
void	set (NamedAtomID const &id, Value const &value)
	Set the value for an NamedAtomID: Extend the map if necessary, filling with the default value. More...
void	finalize ()
	Finalize after sizing all the vectors. More...
void	shrink ()
	Shrink the vectors to remove unused capacity. More...
void	swap (NamedAtomID_Map &s)
	swap( NamedAtomID_Map ) More...
void	clear ()
	Clear the map. More...
void	clear (Value const &default_value_a)
	Clear the map and set a new default value. More...
void	update_sequence_numbering (Size const new_size, utility::vector1< Size > const &old2new)
Size	size () const
	Size. More...
Size	n_residue () const
	Number of residues (size) More...
Size	n_atom (Size const i_res) const
	Number of atoms in a residue. More...
bool	empty () const
	Empty? More...
Value const &	default_value () const
	Default value. More...
void	default_value (Value const &default_value_a)
	Set default value. More...
bool	has (NamedAtomID const &id) const
	Is an element with this NamedAtomID present? More...
ConstReference	operator[] (NamedAtomID const &id) const
	NamedAtomID_Map[ atom_id ] const. More...
Reference	operator[] (NamedAtomID const &id)
	NamedAtomID_Map[ atom_id ]. More...
AtomMap const &	operator[] (Size const i_res) const
	NamedAtomID_Map[ i_res ] const. More...
AtomMap &	operator[] (Size const i_res)
	NamedAtomID_Map[ i_res ]. More...
ConstReference	operator() (NamedAtomID const &id) const
	NamedAtomID_Map( atom_id ) const. More...
Reference	operator() (NamedAtomID const &id)
	NamedAtomID_Map( atom_id ) More...
ConstReference	operator() (Size i_res, std::string const &atom) const
	NamedAtomID_Map( i_res, i_atom ) const. More...
Reference	operator() (Size i_res, std::string const &atom)
	NamedAtomID_Map( i_res, i_atom ) More...
AtomMap const &	operator() (Size const i_res) const
	NamedAtomID_Map( i_res ) const. More...
AtomMap &	operator() (Size const i_res)
	NamedAtomID_Map( i_res ) More...

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The documentation for this class was generated from the following file:

• src/core/id/NamedAtomID_Map.hh