core::scoring::dna::DNATorsionPotential Member List

This is the complete list of members for core::scoring::dna::DNATorsionPotential, including all inherited members.

add_dna_base_distance_constraints(pose::Pose &pose, constraints::ConstraintSet &cst_set) const	core::scoring::dna::DNATorsionPotential	private
add_DNA_torsion_constraint(pose::Pose &pose, Size const i, constraints::ConstraintSet &cst_set, Size const dna_torsion_number, utility::vector1< func::AmberPeriodicFuncOP > const &gaussian_parameter_set) const	core::scoring::dna::DNATorsionPotential	private
add_dna_torsion_tethers(pose::Pose &pose, constraints::ConstraintSet &cst_set) const	core::scoring::dna::DNATorsionPotential	private
add_sugar_ring_closure_constraints(conformation::Residue const &rsd, constraints::ConstraintSet &cst_set) const	core::scoring::dna::DNATorsionPotential
add_sugar_ring_closure_constraints(pose::Pose &pose, constraints::ConstraintSet &cst_set) const	core::scoring::dna::DNATorsionPotential	private
alpha_atom_names_	core::scoring::dna::DNATorsionPotential	private
alpha_components()	core::scoring::dna::DNATorsionPotential	inline
alpha_components_	core::scoring::dna::DNATorsionPotential	private
beta_atom_names_	core::scoring::dna::DNATorsionPotential	private
beta_components()	core::scoring::dna::DNATorsionPotential	inline
beta_components_	core::scoring::dna::DNATorsionPotential	private
c2prime_c3prime_bond_length_	core::scoring::dna::DNATorsionPotential	private
c2prime_c3prime_dist_harm_func_	core::scoring::dna::DNATorsionPotential	private
c2prime_c3prime_sd_	core::scoring::dna::DNATorsionPotential	private
c3prime_c2prime_c1prime_angle_harm_func_	core::scoring::dna::DNATorsionPotential	private
c3prime_c2prime_c1prime_bond_angle_	core::scoring::dna::DNATorsionPotential	private
c4prime_c3prime_c2prime_angle_harm_func_	core::scoring::dna::DNATorsionPotential	private
c4prime_c3prime_c2prime_bond_angle_	core::scoring::dna::DNATorsionPotential	private
delta_atom_names_	core::scoring::dna::DNATorsionPotential	private
delta_components()	core::scoring::dna::DNATorsionPotential	inline
delta_components_	core::scoring::dna::DNATorsionPotential	private
delta_cutoff() const	core::scoring::dna::DNATorsionPotential	inline
DELTA_CUTOFF_	core::scoring::dna::DNATorsionPotential	private
DNATorsionPotential()	core::scoring::dna::DNATorsionPotential
epsilon_atom_names_	core::scoring::dna::DNATorsionPotential	private
epsilon_components()	core::scoring::dna::DNATorsionPotential	inline
epsilon_components_	core::scoring::dna::DNATorsionPotential	private
gamma_atom_names_	core::scoring::dna::DNATorsionPotential	private
gamma_components()	core::scoring::dna::DNATorsionPotential	inline
gamma_components_	core::scoring::dna::DNATorsionPotential	private
get_atom_ids_by_torsion(Size const dna_torsion_number, pose::Pose &pose, Size const resid, id::AtomID &id1, id::AtomID &id2, id::AtomID &id3, id::AtomID &id4) const	core::scoring::dna::DNATorsionPotential	private
init_dna_torsion_parameters()	core::scoring::dna::DNATorsionPotential	private
nu0_atom_names_	core::scoring::dna::DNATorsionPotential	private
nu0_components()	core::scoring::dna::DNATorsionPotential	inline
nu0_components_	core::scoring::dna::DNATorsionPotential	private
nu1_atom_names_	core::scoring::dna::DNATorsionPotential	private
nu1_components()	core::scoring::dna::DNATorsionPotential	inline
nu1_components_	core::scoring::dna::DNATorsionPotential	private
nu2_atom_names_	core::scoring::dna::DNATorsionPotential	private
nu2_components()	core::scoring::dna::DNATorsionPotential	inline
nu2_components_	core::scoring::dna::DNATorsionPotential	private
nu3_atom_names_	core::scoring::dna::DNATorsionPotential	private
nu3_components()	core::scoring::dna::DNATorsionPotential	inline
nu3_components_	core::scoring::dna::DNATorsionPotential	private
nu4_atom_names_	core::scoring::dna::DNATorsionPotential	private
nu4_components()	core::scoring::dna::DNATorsionPotential	inline
nu4_components_	core::scoring::dna::DNATorsionPotential	private
o3prime_c3prime_c2prime_angle_harm_func_	core::scoring::dna::DNATorsionPotential	private
o3prime_c3prime_c2prime_bond_angle_	core::scoring::dna::DNATorsionPotential	private
scale_dna_torsion_sd_	core::scoring::dna::DNATorsionPotential	private
scale_dna_torsion_tether_	core::scoring::dna::DNATorsionPotential	private
setup_constraints(pose::Pose &pose, constraints::ConstraintSetOP &dna_torsion_constraints, constraints::ConstraintSetOP &dna_sugar_close_constraints, constraints::ConstraintSetOP &dna_base_distance_constraints) const	core::scoring::dna::DNATorsionPotential
zeta_atom_names_	core::scoring::dna::DNATorsionPotential	private
zeta_components()	core::scoring::dna::DNATorsionPotential	inline
zeta_components_	core::scoring::dna::DNATorsionPotential	private
~DNATorsionPotential() override	core::scoring::dna::DNATorsionPotential	inline