core::scoring::loop_graph::evaluator::GaussianChainFuncPotentialEvaluator Class Reference

#include <GaussianChainFuncPotentialEvaluator.hh>

Inheritance diagram for core::scoring::loop_graph::evaluator::GaussianChainFuncPotentialEvaluator:

Public Member Functions
	GaussianChainFuncPotentialEvaluator (LoopCycle const &loop_cycle, core::Real const &loop_fixed_cost, pose::Pose const &pose)
	~GaussianChainFuncPotentialEvaluator () override
void	get_f1_f2 (Vector &f1, Vector &f2, bool const takeoff) const override
Public Member Functions inherited from core::scoring::loop_graph::evaluator::LoopClosePotentialEvaluator
	LoopClosePotentialEvaluator (core::Real const &loop_fixed_cost)
	~LoopClosePotentialEvaluator () override
core::Real const &	loop_fixed_cost () const
void	set_loop_closure_energy (core::Real const &setting)
core::Real	loop_closure_energy () const
void	set_involves_current_pose (bool const &setting)
bool	involves_current_pose () const
void	set_current_pose_takeoff_atom (core::id::AtomID const &setting)
core::id::AtomID	current_pose_takeoff_atom () const
void	set_current_pose_landing_atom (core::id::AtomID const &setting)
core::id::AtomID	current_pose_landing_atom () const
void	set_current_pose_takeoff_xyz (Vector const &setting)
Vector	current_pose_takeoff_xyz () const
void	set_current_pose_landing_xyz (Vector const &setting)
Vector	current_pose_landing_xyz () const

Private Member Functions
void	initialize (LoopCycle const &loop_cycle, core::pose::Pose const &pose)

Private Attributes
core::Real const	rna_gaussian_variance_per_residue_
core::Real const	protein_gaussian_variance_per_residue_
core::scoring::func::FuncOP	func_

Constructor & Destructor Documentation

core::scoring::loop_graph::evaluator::GaussianChainFuncPotentialEvaluator::GaussianChainFuncPotentialEvaluator	(	LoopCycle const &	loop_cycle,
		core::Real const &	loop_fixed_cost,
		pose::Pose const &	pose
	)

References initialize().

core::scoring::loop_graph::evaluator::GaussianChainFuncPotentialEvaluator::~GaussianChainFuncPotentialEvaluator ( )

overridedefault

Member Function Documentation

void core::scoring::loop_graph::evaluator::GaussianChainFuncPotentialEvaluator::get_f1_f2 ( Vector &  f1, Vector &  f2, bool const  takeoff  ) const

overridevirtual

Implements core::scoring::loop_graph::evaluator::LoopClosePotentialEvaluator.

References core::scoring::loop_graph::evaluator::LoopClosePotentialEvaluator::current_pose_landing_xyz(), core::scoring::loop_graph::evaluator::LoopClosePotentialEvaluator::current_pose_takeoff_xyz(), and func_.

void core::scoring::loop_graph::evaluator::GaussianChainFuncPotentialEvaluator::initialize ( LoopCycle const &  loop_cycle, core::pose::Pose const &  pose  )

private

References core::scoring::loop_graph::LoopCycle::find_index_for_loop_landing_at_domain(), func_, core::scoring::loop_graph::get_loop_atom(), core::pose::full_model_info::get_residue(), protocols::stepwise::modeler::is_protein(), core::scoring::loop_graph::Loop::landing_domain(), core::scoring::loop_graph::Loop::landing_pos(), core::scoring::loop_graph::LoopCycle::loop(), core::scoring::loop_graph::evaluator::LoopClosePotentialEvaluator::loop_fixed_cost(), protocols::mean_field::max(), protein_gaussian_variance_per_residue_, rna_gaussian_variance_per_residue_, core::scoring::loop_graph::evaluator::LoopClosePotentialEvaluator::set_current_pose_landing_atom(), core::scoring::loop_graph::evaluator::LoopClosePotentialEvaluator::set_current_pose_landing_xyz(), core::scoring::loop_graph::evaluator::LoopClosePotentialEvaluator::set_current_pose_takeoff_atom(), core::scoring::loop_graph::evaluator::LoopClosePotentialEvaluator::set_current_pose_takeoff_xyz(), core::scoring::loop_graph::evaluator::LoopClosePotentialEvaluator::set_involves_current_pose(), core::scoring::loop_graph::evaluator::LoopClosePotentialEvaluator::set_loop_closure_energy(), core::scoring::loop_graph::LoopCycle::size(), core::scoring::loop_graph::Loop::takeoff_domain(), core::scoring::loop_graph::Loop::takeoff_pos(), core::scoring::TR(), and core::pose::Pose::xyz().

Referenced by GaussianChainFuncPotentialEvaluator().

Member Data Documentation

core::scoring::func::FuncOP core::scoring::loop_graph::evaluator::GaussianChainFuncPotentialEvaluator::func_

private

Referenced by get_f1_f2(), and initialize().

core::Real const core::scoring::loop_graph::evaluator::GaussianChainFuncPotentialEvaluator::protein_gaussian_variance_per_residue_

private

Referenced by initialize().

core::Real const core::scoring::loop_graph::evaluator::GaussianChainFuncPotentialEvaluator::rna_gaussian_variance_per_residue_

private

Referenced by initialize().

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The documentation for this class was generated from the following files:

• src/core/scoring/loop_graph/evaluator/GaussianChainFuncPotentialEvaluator.hh
• src/core/scoring/loop_graph/evaluator/GaussianChainFuncPotentialEvaluator.cc