protocols::ligand_docking::rdf::RDFBinaryHbondFunction Class Reference

RDFBinaryHbondFunction returns 1.0 if a pair of atoms are donor and acceptor, 0.0 otherwise. More...

#include <StandardRDFFunctions.hh>

Inheritance diagram for protocols::ligand_docking::rdf::RDFBinaryHbondFunction:

Public Member Functions
	RDFBinaryHbondFunction ()
	~RDFBinaryHbondFunction () override
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data_map) override
	parse tags for RDFBinaryHbondFunction tag More...
RDFResultList	operator() (AtomPairData const &atom_data) override
	compute binary hbond status for atom pair More...
Public Member Functions inherited from protocols::ligand_docking::rdf::RDFBase
	RDFBase (std::string const &name)
	~RDFBase () override
virtual void	preamble (core::pose::Pose &)
	If you have code that needs to be run once per pose (for data caching, etc), put it here. More...
void	add_function_name (std::string const &name)
	add a function name to the list More...
utility::vector1< std::string >	get_function_names ()
	get a list of all the function names which will be present in RDFResultList after operator() is called More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
FunctionSign	function_sign_
std::string	function_name_

Additional Inherited Members
Public Types inherited from protocols::ligand_docking::rdf::RDFBase
enum	FunctionSign { LigandPlusProteinMinus, LigandMinusProteinPlus, SameSign }
	an enum of the possible states that a signed RDF can have More...

Detailed Description

RDFBinaryHbondFunction returns 1.0 if a pair of atoms are donor and acceptor, 0.0 otherwise.

Constructor & Destructor Documentation

protocols::ligand_docking::rdf::RDFBinaryHbondFunction::RDFBinaryHbondFunction

(

)

protocols::ligand_docking::rdf::RDFBinaryHbondFunction::~RDFBinaryHbondFunction ( )

overridedefault

Member Function Documentation

std::string protocols::ligand_docking::rdf::RDFBinaryHbondFunction::class_name ( )

static

Referenced by provide_xml_schema(), and protocols::ligand_docking::rdf::RDFBinaryHbondCreator::type_name().

RDFResultList protocols::ligand_docking::rdf::RDFBinaryHbondFunction::operator() ( AtomPairData const &  atom_data )

overridevirtual

compute binary hbond status for atom pair

Implements protocols::ligand_docking::rdf::RDFBase.

References function_name_, function_sign_, core::chemical::AtomType::is_acceptor(), core::chemical::AtomType::is_donor(), protocols::ligand_docking::rdf::AtomPairData::ligand_atom_type, protocols::ligand_docking::rdf::RDFBase::LigandMinusProteinPlus, protocols::ligand_docking::rdf::RDFBase::LigandPlusProteinMinus, protocols::ligand_docking::rdf::AtomPairData::protein_atom_type, and protocols::ligand_docking::rdf::RDFBase::SameSign.

void protocols::ligand_docking::rdf::RDFBinaryHbondFunction::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data_map  )

overridevirtual

parse tags for RDFBinaryHbondFunction tag

Implements protocols::ligand_docking::rdf::RDFBase.

References protocols::ligand_docking::rdf::RDFBase::add_function_name(), function_name_, function_sign_, protocols::ligand_docking::rdf::RDFBase::LigandMinusProteinPlus, protocols::ligand_docking::rdf::RDFBase::LigandPlusProteinMinus, and protocols::ligand_docking::rdf::RDFBase::SameSign.

void protocols::ligand_docking::rdf::RDFBinaryHbondFunction::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and protocols::ligand_docking::rdf::RDFFunctionFactory::xsd_type_definition_w_attributes().

Referenced by protocols::ligand_docking::rdf::RDFBinaryHbondCreator::provide_xml_schema().

Member Data Documentation

std::string protocols::ligand_docking::rdf::RDFBinaryHbondFunction::function_name_

private

Referenced by operator()(), and parse_my_tag().

FunctionSign protocols::ligand_docking::rdf::RDFBinaryHbondFunction::function_sign_

private

Referenced by operator()(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/ligand_docking/rdf/StandardRDFFunctions.hh
• src/protocols/ligand_docking/rdf/StandardRDFFunctions.cc