protocols::calc_taskop_filters::ConservedPosMutationFilter Class Reference

#include <ConservedPosMutationFilter.hh>

Inheritance diagram for protocols::calc_taskop_filters::ConservedPosMutationFilter:

Public Types
typedef filters::Filter	parent
typedef filters::Filter	Filter
typedef filters::FilterOP	FilterOP

Public Member Functions
	ConservedPosMutationFilter ()
	~ConservedPosMutationFilter () override
FilterOP	clone () const override
FilterOP	fresh_instance () const override
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. In this case, a pose passes if it less than max_allowed_conserved_pos_mutations_ mutations at conserved position. the decision whether a given position counts as conserved is made by the RestrictConservedLowDdgOperation task operation to prevent duplication of code. More...
void	set_max_allowed_conserved_pos_mutations (core::Size value)
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
	~Filter () override
virtual void	report (std::ostream &, core::pose::Pose const &) const
virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
task_operations::RestrictConservedLowDdgOperationOP	conserved_pos_taskop_
core::Size	max_allowed_conserved_pos_mutations_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef filters::Filter protocols::calc_taskop_filters::ConservedPosMutationFilter::Filter

typedef filters::FilterOP protocols::calc_taskop_filters::ConservedPosMutationFilter::FilterOP

typedef filters::Filter protocols::calc_taskop_filters::ConservedPosMutationFilter::parent

Constructor & Destructor Documentation

protocols::calc_taskop_filters::ConservedPosMutationFilter::ConservedPosMutationFilter

(

)

protocols::calc_taskop_filters::ConservedPosMutationFilter::~ConservedPosMutationFilter ( )

overridedefault

Member Function Documentation

bool protocols::calc_taskop_filters::ConservedPosMutationFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise. In this case, a pose passes if it less than max_allowed_conserved_pos_mutations_ mutations at conserved position. the decision whether a given position counts as conserved is made by the RestrictConservedLowDdgOperation task operation to prevent duplication of code.

Implements protocols::filters::Filter.

References core::chemical::ResidueTypeBase::aa(), conserved_pos_taskop_, core::chemical::ResidueTypeBase::is_protein(), max_allowed_conserved_pos_mutations_, core::chemical::oneletter_code_from_aa(), core::pose::Pose::residue_type(), core::pose::Pose::size(), core::id::to_string(), and tr().

std::string protocols::calc_taskop_filters::ConservedPosMutationFilter::class_name ( )

static

Referenced by protocols::calc_taskop_filters::ConservedPosMutationFilterCreator::keyname(), name(), and provide_xml_schema().

filters::FilterOP protocols::calc_taskop_filters::ConservedPosMutationFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

filters::FilterOP protocols::calc_taskop_filters::ConservedPosMutationFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

std::string protocols::calc_taskop_filters::ConservedPosMutationFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::calc_taskop_filters::ConservedPosMutationFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References conserved_pos_taskop_, and max_allowed_conserved_pos_mutations_.

void protocols::calc_taskop_filters::ConservedPosMutationFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), protocols::filters::complex_type_name_for_filter(), and protocols::task_operations::RestrictConservedLowDdgOperation::create_complex_type_generator().

Referenced by protocols::calc_taskop_filters::ConservedPosMutationFilterCreator::provide_xml_schema().

void protocols::calc_taskop_filters::ConservedPosMutationFilter::set_max_allowed_conserved_pos_mutations ( core::Size  value )

inline

References max_allowed_conserved_pos_mutations_.

Member Data Documentation

task_operations::RestrictConservedLowDdgOperationOP protocols::calc_taskop_filters::ConservedPosMutationFilter::conserved_pos_taskop_

private

Referenced by apply(), and parse_my_tag().

core::Size protocols::calc_taskop_filters::ConservedPosMutationFilter::max_allowed_conserved_pos_mutations_

private

Referenced by apply(), parse_my_tag(), and set_max_allowed_conserved_pos_mutations().

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The documentation for this class was generated from the following files:

• src/protocols/calc_taskop_filters/ConservedPosMutationFilter.hh
• src/protocols/calc_taskop_filters/ConservedPosMutationFilter.cc