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core::import_pose::options::RNA_FragmentMonteCarloOptions Member List

This is the complete list of members for core::import_pose::options::RNA_FragmentMonteCarloOptions, including all inherited members.

align_pdb() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
align_pdb_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
all_rna_fragments_file() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
all_rna_fragments_file_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
allow_bulge() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
allow_bulge_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
allow_consecutive_bulges() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
allow_consecutive_bulges_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
allow_fragment_moves_in_bps() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
allow_fragment_moves_in_bps_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
allowed_bulge_res() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
allowed_bulge_res_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
autofilter() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
autofilter_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
autofilter_score_quantile() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
autofilter_score_quantile_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
bps_moves() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
bps_moves_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
center_jumps_in_single_stranded() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
center_jumps_in_single_stranded_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
chainbreak_weight() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
chainbreak_weight_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
chunk_initialization_pdb_files() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
chunk_initialization_pdb_files_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
chunk_pdb_files() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
chunk_pdb_files_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
chunk_silent_files() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
chunk_silent_files_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
clone() const core::import_pose::options::RNA_FragmentMonteCarloOptions
close_loops() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
close_loops_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
close_loops_after_each_move() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
close_loops_after_each_move_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
convert_protein_centroid() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
convert_protein_centroid_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
deriv_check() const core::import_pose::options::RNA_MinimizerOptionsinline
disallow_bps_at_extra_min_res() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
disallow_bps_at_extra_min_res_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
disallow_realign() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
disallow_realign_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
dock_chunks() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
dock_chunks_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
dock_chunks_res() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
dock_chunks_res_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
dock_each_chunk() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
dock_each_chunk_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
dock_each_chunk_per_chain() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
dock_each_chunk_per_chain_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
dock_into_density() const core::import_pose::options::RNA_BasicOptionsinline
dock_into_density_legacy() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
dock_into_density_legacy_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
docking() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
docking_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
docking_move_size() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
docking_move_size_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
dump_pdb() const core::import_pose::options::RNA_BasicOptionsinline
exhaustive_fragment_insertion() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
exhaustive_fragment_insertion_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
extra_minimize_chi_res() const core::import_pose::options::RNA_MinimizerOptionsinline
extra_minimize_res() const core::import_pose::options::RNA_MinimizerOptionsinline
filter_chain_closure() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
filter_chain_closure_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
filter_chain_closure_distance() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
filter_chain_closure_distance_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
filter_chain_closure_halfway() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
filter_chain_closure_halfway_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
filter_lores_base_pairs() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
filter_lores_base_pairs_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
filter_lores_base_pairs_early() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
filter_lores_base_pairs_early_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
filter_vdw() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
filter_vdw_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
fixed_stems() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
fixed_stems_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
frag_size() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
frag_size_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
ft_close_chains() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
ft_close_chains_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
gradual_constraints() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
gradual_constraints_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
grid_vdw_weight() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
grid_vdw_weight_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
helical_substruct_res() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
helical_substruct_res_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
helical_substructs() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
helical_substructs_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
ignore_secstruct() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
ignore_secstruct_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
initial_structures_provided() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
initial_structures_provided_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
initialize_for_farna_optimizer(core::Size const &cycles)core::import_pose::options::RNA_FragmentMonteCarloOptions
initialize_from_command_line()core::import_pose::options::RNA_FragmentMonteCarloOptions
initialize_from_options(utility::options::OptionCollection const &opts)core::import_pose::options::RNA_FragmentMonteCarloOptions
initialize_from_tag(utility::tag::TagCOP const &tag)core::import_pose::options::RNA_FragmentMonteCarloOptions
input_res() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
input_res_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
input_res_initialize() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
input_res_initialize_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
jump_change_frequency() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
jump_change_frequency_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
jump_histogram_binwidth() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
jump_histogram_binwidth_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
jump_histogram_binwidth_rotvector() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
jump_histogram_binwidth_rotvector_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
jump_histogram_boxsize() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
jump_histogram_boxsize_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
jump_library_file() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
jump_library_file_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
linear_chainbreak_weight() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
linear_chainbreak_weight_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
list_attributes(utility::tag::AttributeList &attlist)core::import_pose::options::RNA_FragmentMonteCarloOptionsstatic
list_options_read(utility::options::OptionKeyList &opts)core::import_pose::options::RNA_FragmentMonteCarloOptionsstatic
max_iter() const core::import_pose::options::RNA_MinimizerOptionsinline
min_type() const core::import_pose::options::RNA_MinimizerOptionsinline
minimize_all_protein() const core::import_pose::options::RNA_MinimizerOptionsinline
minimize_bps() const core::import_pose::options::RNA_MinimizerOptionsinline
minimize_protein_sc() const core::import_pose::options::RNA_MinimizerOptionsinline
minimize_rounds() const core::import_pose::options::RNA_MinimizerOptionsinline
minimize_structure() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
minimize_structure_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
minimizer_use_coordinate_constraints() const core::import_pose::options::RNA_MinimizerOptionsinline
model_with_density() const core::import_pose::options::RNA_BasicOptionsinline
monte_carlo_cycles() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
monte_carlo_cycles_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
move_first_rigid_body() const core::import_pose::options::RNA_BasicOptionsinline
nblist_auto_update() const core::import_pose::options::RNA_MinimizerOptionsinline
new_fold_tree_initializer() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
new_fold_tree_initializer_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
output_filters() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
output_filters_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
output_histogram_file() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
output_histogram_file_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
output_jump_chainbreak() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
output_jump_chainbreak_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
output_jump_o3p_to_o5p() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
output_jump_o3p_to_o5p_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
output_jump_reference_RT_string() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
output_jump_reference_RT_string_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
output_jump_res() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
output_jump_res_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
output_jump_target_xyz() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
output_jump_target_xyz_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
output_lores_silent_file() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
output_lores_silent_file_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
output_rotation_vector() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
output_rotation_vector_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
output_score_file() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
output_score_file_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
output_score_frequency() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
output_score_frequency_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
override_refine_pose_rounds() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
override_refine_pose_rounds_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
parse_my_tag(utility::tag::TagCOP) overridecore::import_pose::options::RNA_FragmentMonteCarloOptionsinlinevirtual
protein_pack_all() const core::import_pose::options::RNA_MinimizerOptionsinline
protein_packing() const core::import_pose::options::RNA_MinimizerOptionsinline
protein_packing_distance() const core::import_pose::options::RNA_MinimizerOptionsinline
ramp_rnp_vdw() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
ramp_rnp_vdw_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
randomize_init_rnp() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
randomize_init_rnp_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
refine_native_get_good_FT() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
refine_native_get_good_FT_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
refine_pose() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
refine_pose_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
relax_structure() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
relax_structure_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
rmsd_screen() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
rmsd_screen_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
RNA_BasicOptions()core::import_pose::options::RNA_BasicOptions
RNA_FragmentMonteCarloOptions()core::import_pose::options::RNA_FragmentMonteCarloOptions
RNA_MinimizerOptions()core::import_pose::options::RNA_MinimizerOptions
rna_protein_docking() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
rna_protein_docking_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
rna_protein_docking_freq() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
rna_protein_docking_freq_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
rna_protein_docking_legacy() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
rna_protein_docking_legacy_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
rnp_high_res_cycles() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
rnp_high_res_cycles_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
rnp_high_res_relax() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
rnp_high_res_relax_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
rnp_min_first() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
rnp_min_first_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
rnp_pack_first() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
rnp_pack_first_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
rnp_ramp_rep() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
rnp_ramp_rep_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
root_at_first_rigid_body() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
root_at_first_rigid_body_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
rounds() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
rounds_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
save_jump_histogram() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
save_jump_histogram_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
save_times() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
save_times_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
set_align_pdb(std::string const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_all_rna_fragments_file(std::string const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_allow_bulge(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_allow_consecutive_bulges(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_allow_fragment_moves_in_bps(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_allowed_bulge_res(utility::vector1< core::Size > const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_autofilter(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_autofilter_score_quantile(core::Real const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_bps_moves(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_center_jumps_in_single_stranded(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_chainbreak_weight(core::Real const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_chunk_initialization_pdb_files(utility::vector1< std::string > const &input_files)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_chunk_pdb_files(utility::vector1< std::string > const &chunk_pdb_files)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_chunk_silent_files(utility::vector1< std::string > const &chunk_silent_files)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_close_loops(bool const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_close_loops_after_each_move(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_convert_protein_centroid(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_deriv_check(bool const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_disallow_bps_at_extra_min_res(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_disallow_realign(bool const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_dock_chunks(utility::vector1< std::string > const &dock_chunks)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_dock_chunks_res(utility::vector1< core::Size > const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_dock_each_chunk(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_dock_each_chunk_per_chain(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_dock_into_density(bool const &setting)core::import_pose::options::RNA_BasicOptionsinline
set_dock_into_density_legacy(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_docking(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_docking_move_size(core::Real const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_dump_pdb(bool const setting)core::import_pose::options::RNA_BasicOptionsinline
set_exhaustive_fragment_insertion(Size const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_extra_minimize_chi_res(utility::vector1< Size > const &extra_minimize_chi_res)core::import_pose::options::RNA_MinimizerOptionsinline
set_extra_minimize_res(utility::vector1< Size > const &extra_minimize_res)core::import_pose::options::RNA_MinimizerOptionsinline
set_filter_chain_closure(bool const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_filter_chain_closure_distance(core::Real const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_filter_chain_closure_halfway(bool const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_filter_lores_base_pairs(bool const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_filter_lores_base_pairs_early(bool const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_filter_vdw(bool const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_fixed_stems(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_frag_size(core::Size const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_ft_close_chains(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_gradual_constraints(bool const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_grid_vdw_weight(core::Real const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_helical_substruct_res(utility::vector1< utility::vector1< core::Size > > const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_helical_substructs(utility::vector1< std::string > const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_ignore_secstruct(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_initial_structures_provided(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_input_res(utility::vector1< Size > const &input_res)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_input_res_initialize(utility::vector1< Size > const &input_res)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_jump_change_frequency(core::Real const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_jump_histogram_binwidth(core::Real const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_jump_histogram_binwidth_rotvector(core::Real const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_jump_histogram_boxsize(core::Real const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_jump_library_file(std::string const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_linear_chainbreak_weight(core::Real const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_max_iter(core::Size const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_min_type(std::string const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_minimize_all_protein(bool const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_minimize_bps(bool const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_minimize_protein_sc(bool const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_minimize_rounds(core::Size const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_minimize_structure(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_minimizer_use_coordinate_constraints(bool const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_model_with_density(bool const &setting)core::import_pose::options::RNA_BasicOptionsinline
set_monte_carlo_cycles(core::Size const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_move_first_rigid_body(bool const &setting)core::import_pose::options::RNA_BasicOptionsinline
set_nblist_auto_update(bool const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_new_fold_tree_initializer(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_output_filters(bool const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_output_histogram_file(std::string const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_output_jump_chainbreak(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_output_jump_o3p_to_o5p(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_output_jump_reference_RT_string(std::string const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_output_jump_res(utility::vector1< Size > const &output_jump_res)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_output_jump_target_xyz(core::Vector const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_output_lores_silent_file(bool const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_output_rotation_vector(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_output_score_file(std::string const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_output_score_frequency(core::Size const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_override_refine_pose_rounds(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_protein_pack_all(bool const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_protein_packing(bool const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_protein_packing_distance(core::Real const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_ramp_rnp_vdw(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_randomize_init_rnp(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_refine_native_get_good_FT(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_refine_pose(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_relax_structure(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_rmsd_screen(core::Real const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_rna_protein_docking(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_rna_protein_docking_freq(core::Real const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_rna_protein_docking_legacy(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_rnp_high_res_cycles(core::Real const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_rnp_high_res_relax(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_rnp_min_first(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_rnp_pack_first(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_rnp_ramp_rep(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_root_at_first_rigid_body(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_rounds(core::Size const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_save_jump_histogram(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_save_times(bool const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_simple_rmsd_cutoff_relax(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_skip_o2prime_trials(bool const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_small_docking_moves(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_staged_constraints(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_superimpose_over_all(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_suppress_bp_constraint(core::Real const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_symm_hack_arity(Size const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_temperature(core::Real const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_titrate_stack_bonus(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_use_chem_shift_data(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_use_nblist(bool const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_user_defined_cycles(bool const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_vall_torsions_file(std::string const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_vary_bond_geometry(bool const &setting)core::import_pose::options::RNA_MinimizerOptionsinline
set_vdw_rep_screen_include_sidechains(bool const setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_VDW_rep_screen_info(utility::vector1< std::string > const &setting)core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
set_verbose(bool const &setting)core::import_pose::options::RNA_BasicOptionsinline
simple_rmsd_cutoff_relax() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
simple_rmsd_cutoff_relax_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
skip_o2prime_trials() const core::import_pose::options::RNA_MinimizerOptionsinline
small_docking_moves() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
small_docking_moves_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
staged_constraints() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
staged_constraints_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
superimpose_over_all() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
superimpose_over_all_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
suppress_bp_constraint() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
suppress_bp_constraint_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
symm_hack_arity() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
symm_hack_arity_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
temperature() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
temperature_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
titrate_stack_bonus() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
titrate_stack_bonus_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
type() const overridecore::import_pose::options::RNA_FragmentMonteCarloOptionsinlinevirtual
use_chem_shift_data() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
use_chem_shift_data_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
use_nblist() const core::import_pose::options::RNA_MinimizerOptionsinline
user_defined_cycles() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
user_defined_cycles_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
vall_torsions_file() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
vary_bond_geometry() const core::import_pose::options::RNA_MinimizerOptionsinline
vdw_rep_screen_include_sidechains() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
vdw_rep_screen_include_sidechains_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
VDW_rep_screen_info() const core::import_pose::options::RNA_FragmentMonteCarloOptionsinline
VDW_rep_screen_info_core::import_pose::options::RNA_FragmentMonteCarloOptionsprivate
verbose() const core::import_pose::options::RNA_BasicOptionsinline
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