MutableResidueType.cc File Reference

Method definitions for MutableResidueType. More...

#include <core/chemical/MutableResidueType.hh>
#include <core/chemical/MutableResidueConnection.hh>
#include <core/chemical/ResidueProperties.hh>
#include <core/chemical/residue_support.hh>
#include <core/chemical/icoor_support.hh>
#include <core/chemical/AtomICoor.fwd.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/Atom.hh>
#include <core/chemical/AtomTypeSet.hh>
#include <core/chemical/Element.hh>
#include <core/chemical/ElementSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/MMAtomType.hh>
#include <core/chemical/MMAtomTypeSet.hh>
#include <core/chemical/orbitals/OrbitalTypeSet.hh>
#include <core/chemical/rings/RingConformerSet.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/gasteiger/GasteigerAtomTypeSet.hh>
#include <core/chemical/rna/RNA_Info.hh>
#include <core/chemical/carbohydrates/CarbohydrateInfo.hh>
#include <core/chemical/bond_support.hh>
#include <core/chemical/RestypeDestructionEvent.hh>
#include <core/chemical/rotamers/NCAARotamerLibrarySpecification.hh>
#include <core/chemical/Orbital.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueConnection.hh>
#include <basic/Tracer.hh>
#include <utility>
#include <utility/py/PyAssert.hh>
#include <utility/vector1.hh>
#include <utility/graph/ring_detection.hh>
#include <utility/pointer/memory.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/string.functions.hh>
#include <numeric/conversions.hh>
#include <algorithm>

Namespaces
	core
	A class for reading in the atom type properties.
	core::chemical

Functions
static basic::Tracer	core::chemical::TR ("core.chemical.MutableResidueType")
utility::vector1< VD >	core::chemical::remap_vect (utility::vector1< VD > const &vect, std::map< VD, VD > const &old_to_new)
std::string	core::chemical::correct_conn (std::string const &old, core::Size const conn_id_deleted)
	A short utility function for update_icoors_after_connection_deletion() More...
std::ostream &	core::chemical::operator<< (std::ostream &output, MutableResidueType const &object_to_output)

Detailed Description

Method definitions for MutableResidueType.

Author

Phil Bradley Rocco Moretti (rmore.nosp@m.ttia.nosp@m.se@gm.nosp@m.ail..nosp@m.com) Steven Combs Vikram K. Mulligan - properties for D-, beta- and other noncanonicals Jason W. Labonte (code related to rings, properties, lipids, carbohydrates, and other non-AAs)