protocols::motifs::MotifDnaPacker Member List

This is the complete list of members for protocols::motifs::MotifDnaPacker, including all inherited members.

apply(core::pose::Pose &) override	protocols::motifs::MotifDnaPacker	virtual
aromatic_motifs(core::pose::Pose &pose, utility::vector1< core::Size > &design_positions, std::set< core::Size > &src_pos, std::map< core::Size, core::pack::rotamer_set::Rotamers > &rotamer_map, std::map< core::Size, std::set< std::string > > &types_map, std::list< std::string > &info_lines, core::pack::task::TaskFactoryOP taskfactory)	protocols::motifs::MotifDnaPacker	private
aromatic_motifs_	protocols::motifs::MotifDnaPacker	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::motifs::MotifDnaPacker	virtual
create()	protocols::moves::Mover	virtual
dna_design_	protocols::motifs::MotifDnaPacker	private
dna_packer_	protocols::motifs::MotifDnaPacker	private
expand_motifs(core::pose::Pose &pose, utility::vector1< core::Size > &design_positions, std::set< core::Size > &src_pos, std::map< core::Size, core::pack::rotamer_set::Rotamers > &rotamer_map, std::map< core::Size, std::set< std::string > > &types_map, std::list< std::string > &info_lines, core::pack::task::TaskFactoryOP taskfactory)	protocols::motifs::MotifDnaPacker	private
expand_motifs_	protocols::motifs::MotifDnaPacker	private
filename_root_	protocols::motifs::MotifDnaPacker	private
flex_dna_sugar_	protocols::motifs::MotifDnaPacker	private
fresh_instance() const override	protocols::motifs::MotifDnaPacker	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::motifs::MotifDnaPacker	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
init_options()	protocols::motifs::MotifDnaPacker	private
init_standard(core::pose::Pose &)	protocols::motifs::MotifDnaPacker	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
minimize_dna_	protocols::motifs::MotifDnaPacker	private
motif_expansion_inner_loop(core::pose::Pose &pose, std::set< core::Size > current_pos, std::map< core::Size, core::pack::rotamer_set::Rotamers >::const_iterator it, std::set< std::string >::const_iterator it2, std::map< core::Size, core::pack::rotamer_set::Rotamers > &rotamer_map, std::list< std::string > &info_lines, core::pack::task::TaskFactoryOP taskfactory)	protocols::motifs::MotifDnaPacker	private
motif_search_	protocols::motifs::MotifDnaPacker	private
MotifDnaPacker()	protocols::motifs::MotifDnaPacker
MotifDnaPacker(core::scoring::ScoreFunctionOP, bool minimize=false, std::string filename_root="dnapacker")	protocols::motifs::MotifDnaPacker
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::motifs::MotifDnaPacker	static
name()	protocols::moves::Mover	inlinestatic
num_repacks_	protocols::motifs::MotifDnaPacker	private
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)	protocols::moves::Mover	virtual
pdboutput_	protocols::motifs::MotifDnaPacker	private
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::motifs::MotifDnaPacker	static
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
run_motifs(core::pose::Pose &pose, utility::vector1< core::Size > &design_positions, std::set< core::Size > &src_pos, std::map< core::Size, core::pack::rotamer_set::Rotamers > &rotamer_map, std::map< core::Size, std::set< std::string > > &types_map, std::list< std::string > &info_lines, core::pack::task::TaskFactoryOP taskfactory)	protocols::motifs::MotifDnaPacker	private
run_motifs_	protocols::motifs::MotifDnaPacker	private
scorefxn_	protocols::motifs::MotifDnaPacker	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
special_rotweight_	protocols::motifs::MotifDnaPacker	private
starting_pose_	protocols::motifs::MotifDnaPacker	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
targeted_dna_	protocols::motifs::MotifDnaPacker	private
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
~MotifDnaPacker() override	protocols::motifs::MotifDnaPacker