| amoeba_type_lookup(std::string const &atomname, std::string const &resname, std::string const &variantname) const | core::scoring::VdWTinkerPotential | |
| assign_all_amoeba_types(pose::Pose &pose) const | core::scoring::VdWTinkerPotential | |
| assign_residue_amoeba_type(Residue const &rsd, VdWTinkerResidueInfo &mp) const | core::scoring::VdWTinkerPotential | |
| default_variant_ | core::scoring::VdWTinkerPotential | private |
| eval_residue_pair_derivatives(conformation::Residue const &rsd1, conformation::Residue const &rsd2, VdWTinkerResidueInfo const &mp1, VdWTinkerResidueInfo const &mp2, pose::Pose const &pose, Real const &factor, utility::vector1< DerivVectorPair > &r1_atom_derivs, utility::vector1< DerivVectorPair > &r2_atom_derivs) const | core::scoring::VdWTinkerPotential | |
| get_res_res_vdw(Residue const &rsd1, VdWTinkerResidueInfo const &mp1, Residue const &rsd2, VdWTinkerResidueInfo const &mp2) const | core::scoring::VdWTinkerPotential | |
| get_rotamers_vdw_info(pose::Pose const &pose, conformation::RotamerSetBase &) const | core::scoring::VdWTinkerPotential | |
| read_in_amoeba_parameters() | core::scoring::VdWTinkerPotential | |
| read_in_vdw_tinker_parameters() | core::scoring::VdWTinkerPotential | |
| Residue typedef | core::scoring::VdWTinkerPotential | |
| setup_for_packing(pose::Pose &pose, utility::vector1< bool > const &repacking_residues) const | core::scoring::VdWTinkerPotential | |
| setup_for_scoring(pose::Pose &pose) const | core::scoring::VdWTinkerPotential | |
| type_lookup_ | core::scoring::VdWTinkerPotential | private |
| update_residue_for_packing(pose::Pose &pose, Size const seqpos) const | core::scoring::VdWTinkerPotential | |
| vdw_depth_ | core::scoring::VdWTinkerPotential | private |
| vdw_radius_ | core::scoring::VdWTinkerPotential | private |
| vdw_reduce_ | core::scoring::VdWTinkerPotential | private |
| VdWTinkerPotential() | core::scoring::VdWTinkerPotential | inline |