protocols::match::MatcherTask Member List

This is the complete list of members for protocols::match::MatcherTask, including all inherited members.

add_filter(std::string const &filter_name)	protocols::match::MatcherTask
append_downstream_atom_to_active_site_required_list(core::id::AtomID atid)	protocols::match::MatcherTask
append_upstream_resiue_as_defining_active_site(core::Size resid, Real radius)	protocols::match::MatcherTask
BoundingBox typedef	protocols::match::MatcherTask
build_round1_hits_twice() const	protocols::match::MatcherTask
build_round1_hits_twice_	protocols::match::MatcherTask	private
clear_downstream_orientation_atoms()	protocols::match::MatcherTask
consolidate_matches(bool setting)	protocols::match::MatcherTask
consolidate_matches() const	protocols::match::MatcherTask
consolidate_matches_	protocols::match::MatcherTask	private
cstfile_name() const	protocols::match::MatcherTask
cstfile_name_	protocols::match::MatcherTask	private
define_active_site_from_gridlig_file(std::string const &file_name)	protocols::match::MatcherTask
define_active_site_from_residue_radii_list()	protocols::match::MatcherTask
define_match_by_single_downstream_positioning(bool setting)	protocols::match::MatcherTask
define_match_by_single_downstream_positioning() const	protocols::match::MatcherTask
define_match_by_single_downstream_positioning_	protocols::match::MatcherTask	private
determine_all_match_relevant_downstream_atoms()	protocols::match::MatcherTask	private
downstream_atom_inds_used_in_matching_	protocols::match::MatcherTask	private
downstream_atoms_required_inside_active_site() const	protocols::match::MatcherTask
downstream_atoms_required_inside_active_site_	protocols::match::MatcherTask	private
downstream_orientation_atoms() const	protocols::match::MatcherTask
downstream_orientation_atoms_	protocols::match::MatcherTask	private
downstream_pose() const	protocols::match::MatcherTask
downstream_pose_	protocols::match::MatcherTask	private
dynamic_grid_refinement() const	protocols::match::MatcherTask
dynamic_grid_refinement_	protocols::match::MatcherTask	private
enumerate_ligand_rotamers() const	protocols::match::MatcherTask
enumerate_ligand_rotamers_	protocols::match::MatcherTask	private
enz_input_data() const	protocols::match::MatcherTask
enz_input_data_	protocols::match::MatcherTask	private
euclidean_bin_widths() const	protocols::match::MatcherTask
euclidean_bin_widths_	protocols::match::MatcherTask	private
euler_bin_widths() const	protocols::match::MatcherTask
euler_bin_widths_	protocols::match::MatcherTask	private
evaluator_name(std::string const &setting)	protocols::match::MatcherTask
evaluator_name() const	protocols::match::MatcherTask
evaluator_name_	protocols::match::MatcherTask	private
filter_names() const	protocols::match::MatcherTask
filter_names_	protocols::match::MatcherTask	private
filter_upstream_and_downstream_collisions_by_score_	protocols::match::MatcherTask	private
filter_upstream_and_downstream_residue_collisions_	protocols::match::MatcherTask	private
filter_upstream_collisions_by_score(bool setting)	protocols::match::MatcherTask
filter_upstream_collisions_by_score() const	protocols::match::MatcherTask
filter_upstream_collisions_by_score_	protocols::match::MatcherTask	private
filter_upstream_downstream_collisions(bool setting)	protocols::match::MatcherTask
filter_upstream_downstream_collisions() const	protocols::match::MatcherTask
filter_upstream_downstream_collisions_by_score(bool setting)	protocols::match::MatcherTask
filter_upstream_downstream_collisions_by_score() const	protocols::match::MatcherTask
filter_upstream_residue_collisions(bool setting)	protocols::match::MatcherTask
filter_upstream_residue_collisions() const	protocols::match::MatcherTask
filter_upstream_residue_collisions_	protocols::match::MatcherTask	private
generic_pose_build_resids_	protocols::match::MatcherTask	private
geom_csts_downstream_output() const	protocols::match::MatcherTask
geom_csts_downstream_output_	protocols::match::MatcherTask	private
get_self_ptr() const	protocols::match::MatcherTask	inline
get_self_ptr()	protocols::match::MatcherTask	inline
gridlig_active_site_definition() const	protocols::match::MatcherTask
gridlig_active_site_definition_	protocols::match::MatcherTask	private
gridlig_file_name() const	protocols::match::MatcherTask
gridlig_fname_	protocols::match::MatcherTask	private
grouper_ds_rmsd() const	protocols::match::MatcherTask
grouper_ds_rmsd_	protocols::match::MatcherTask	private
grouper_name(std::string const &setting)	protocols::match::MatcherTask
grouper_name() const	protocols::match::MatcherTask
grouper_name_	protocols::match::MatcherTask	private
ignore_cmdline_for_build_points_	protocols::match::MatcherTask	private
initialize_active_site_definition_from_command_line()	protocols::match::MatcherTask	private
initialize_enzdes_input_data_from_command_line()	protocols::match::MatcherTask	private
initialize_enzdes_input_data_with_mcfi_list(utility::vector1< toolbox::match_enzdes_util::MatchConstraintFileInfoListOP > mcfi_list_vec)	protocols::match::MatcherTask	private
initialize_from_command_line()	protocols::match::MatcherTask
initialize_occupied_space_bounding_box_from_command_line()	protocols::match::MatcherTask	private
initialize_orientation_atoms_from_command_line()	protocols::match::MatcherTask	private
initialize_output_options_from_command_line()	protocols::match::MatcherTask	private
initialize_scaffold_active_site_residue_list_from_command_line()	protocols::match::MatcherTask	private
initialize_upstream_downstream_collision_filter_data_from_command_line()	protocols::match::MatcherTask	private
initialize_upstream_residue_collision_filter_data_from_command_line()	protocols::match::MatcherTask	private
initialize_with_mcfi_list(utility::vector1< toolbox::match_enzdes_util::MatchConstraintFileInfoListOP > mcfi_list_vec)	protocols::match::MatcherTask
MatcherTask()	protocols::match::MatcherTask
modify_pose_build_resids_from_endes_input()	protocols::match::MatcherTask
n_to_output_per_group(core::Size setting)	protocols::match::MatcherTask
n_to_output_per_group() const	protocols::match::MatcherTask
n_to_output_per_group_	protocols::match::MatcherTask	private
occ_space_bounding_box() const	protocols::match::MatcherTask
occ_space_bounding_box_	protocols::match::MatcherTask	private
only_enumerate_non_match_redundant_ligand_rotamers() const	protocols::match::MatcherTask
only_enumerate_non_match_redundant_ligand_rotamers_	protocols::match::MatcherTask	private
output_file_name(std::string const &setting)	protocols::match::MatcherTask
output_file_name() const	protocols::match::MatcherTask
output_file_name_	protocols::match::MatcherTask	private
output_matchres_only() const	protocols::match::MatcherTask
output_matchres_only_	protocols::match::MatcherTask	private
output_scores() const	protocols::match::MatcherTask
output_scores_	protocols::match::MatcherTask	private
output_writer_name(std::string const &setting)	protocols::match::MatcherTask
output_writer_name() const	protocols::match::MatcherTask
output_writer_name_	protocols::match::MatcherTask	private
per_cst_pose_build_resids_	protocols::match::MatcherTask	private
permitted_overlap() const	protocols::match::MatcherTask
permitted_overlap_	protocols::match::MatcherTask	private
Real typedef	protocols::match::MatcherTask
relevant_downstream_atoms() const	protocols::match::MatcherTask
relevant_downstream_atoms_	protocols::match::MatcherTask	private
remove_downstream_object_from_upstream_pose()	protocols::match::MatcherTask	private
score_output_file_name(std::string const &setting)	protocols::match::MatcherTask
score_output_file_name() const	protocols::match::MatcherTask
score_output_file_name_	protocols::match::MatcherTask	private
set_active_site_residue_list_to_preexisting_partial_match()	protocols::match::MatcherTask	private
set_downstream_orientation_atoms(utility::vector1< core::id::AtomID > const &orientation_atoms)	protocols::match::MatcherTask
set_downstream_pose(core::pose::Pose const &input_pose)	protocols::match::MatcherTask
set_downstream_pose(core::pose::Pose const &pose, utility::vector1< core::id::AtomID > const &orientation_atoms)	protocols::match::MatcherTask
set_enumerate_ligand_rotamers(bool setting)	protocols::match::MatcherTask
set_enz_input_data(toolbox::match_enzdes_util::EnzConstraintIOCOP data)	protocols::match::MatcherTask
set_hash_euclidean_bin_width(Real width)	protocols::match::MatcherTask
set_hash_euler_bin_width(Real width)	protocols::match::MatcherTask
set_ignore_cmdline_for_build_points(bool setting)	protocols::match::MatcherTask
set_occupied_space_bounding_box(BoundingBox const &bb)	protocols::match::MatcherTask
set_only_enumerate_non_match_redundant_ligand_rotamers(bool setting)	protocols::match::MatcherTask
set_original_scaffold_build_points(utility::vector1< core::Size > const &resids)	protocols::match::MatcherTask
set_original_scaffold_build_points_for_geometric_constraint(core::Size geom_cst_id, utility::vector1< core::Size > const &resids)	protocols::match::MatcherTask
set_permitted_overlap(Real permitted_overlap)	protocols::match::MatcherTask
set_upstream_pose(core::pose::Pose const &pose)	protocols::match::MatcherTask
share_build_points_for_geomcsts_	protocols::match::MatcherTask	private
Size typedef	protocols::match::MatcherTask
upstream_downstream_atom_collision_tolerance(Real setting)	protocols::match::MatcherTask
upstream_downstream_atom_collision_tolerance() const	protocols::match::MatcherTask
upstream_downstream_atom_collision_tolerance_	protocols::match::MatcherTask	private
upstream_downstream_residue_collision_score_cutoff(Real setting)	protocols::match::MatcherTask
upstream_downstream_residue_collision_score_cutoff() const	protocols::match::MatcherTask
upstream_downstream_residue_collision_score_cutoff_	protocols::match::MatcherTask	private
upstream_downstream_residue_collision_Wfa_atr(Real setting)	protocols::match::MatcherTask
upstream_downstream_residue_collision_Wfa_atr() const	protocols::match::MatcherTask
upstream_downstream_residue_collision_Wfa_atr_	protocols::match::MatcherTask	private
upstream_downstream_residue_collision_Wfa_rep(Real setting)	protocols::match::MatcherTask
upstream_downstream_residue_collision_Wfa_rep() const	protocols::match::MatcherTask
upstream_downstream_residue_collision_Wfa_rep_	protocols::match::MatcherTask	private
upstream_downstream_residue_collision_Wfa_sol(Real setting)	protocols::match::MatcherTask
upstream_downstream_residue_collision_Wfa_sol() const	protocols::match::MatcherTask
upstream_downstream_residue_collision_Wfa_sol_	protocols::match::MatcherTask	private
upstream_only_geom_cst() const	protocols::match::MatcherTask
upstream_only_geom_cst_	protocols::match::MatcherTask	private
upstream_pose() const	protocols::match::MatcherTask
upstream_pose_	protocols::match::MatcherTask	private
upstream_pose_build_resids_for_geometric_constraint(core::Size cst_id) const	protocols::match::MatcherTask
upstream_pose_name() const	protocols::match::MatcherTask
upstream_pose_name_	protocols::match::MatcherTask	private
upstream_resids_and_radii_defining_active_site() const	protocols::match::MatcherTask
upstream_resids_and_radii_defining_active_site_	protocols::match::MatcherTask	private
upstream_residue_collision_score_cutoff(Real setting)	protocols::match::MatcherTask
upstream_residue_collision_score_cutoff() const	protocols::match::MatcherTask
upstream_residue_collision_score_cutoff_	protocols::match::MatcherTask	private
upstream_residue_collision_tolerance(Real setting)	protocols::match::MatcherTask
upstream_residue_collision_tolerance() const	protocols::match::MatcherTask
upstream_residue_collision_tolerance_	protocols::match::MatcherTask	private
upstream_residue_collision_Wfa_atr(Real setting)	protocols::match::MatcherTask
upstream_residue_collision_Wfa_atr() const	protocols::match::MatcherTask
upstream_residue_collision_Wfa_atr_	protocols::match::MatcherTask	private
upstream_residue_collision_Wfa_rep(Real setting)	protocols::match::MatcherTask
upstream_residue_collision_Wfa_rep() const	protocols::match::MatcherTask
upstream_residue_collision_Wfa_rep_	protocols::match::MatcherTask	private
upstream_residue_collision_Wfa_sol(Real setting)	protocols::match::MatcherTask
upstream_residue_collision_Wfa_sol() const	protocols::match::MatcherTask
upstream_residue_collision_Wfa_sol_	protocols::match::MatcherTask	private
use_different_build_points_for_each_geometric_constraint(core::Size n_geometric_constraints)	protocols::match::MatcherTask
use_input_sc() const	protocols::match::MatcherTask
use_input_sc_	protocols::match::MatcherTask	private
validate_downstream_orientation_atoms() const	protocols::match::MatcherTask	private
Vector typedef	protocols::match::MatcherTask