protocols::optimize_weights::PSSMOptEPositionData Member List

This is the complete list of members for protocols::optimize_weights::PSSMOptEPositionData, including all inherited members.

AA typedef	protocols::optimize_weights::PNatAAOptEPositionData
add_rotamer_line_data(PNatAAOptERotamerDataOP rot_in)	protocols::optimize_weights::PNatAAOptEPositionData	inline
data()	protocols::optimize_weights::PNatAAOptEPositionData	inline
data() const	protocols::optimize_weights::PNatAAOptEPositionData	inline
EnergyMap typedef	protocols::optimize_weights::OptEPositionData
get_score(Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, core::Size const num_energy_dofs, int const num_ref_dofs, int const num_total_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list) const override	protocols::optimize_weights::PSSMOptEPositionData	virtual
memory_use() const override	protocols::optimize_weights::PSSMOptEPositionData	virtual
Multivec typedef	protocols::optimize_weights::OptEPositionData
native_aa() const	protocols::optimize_weights::PNatAAOptEPositionData	inline
neighbor_count() const	protocols::optimize_weights::PNatAAOptEPositionData	inline
OptEPositionData()	protocols::optimize_weights::OptEPositionData
parent typedef	protocols::optimize_weights::PSSMOptEPositionData
PNatAAOptEPositionData()	protocols::optimize_weights::PNatAAOptEPositionData
position() const	protocols::optimize_weights::PNatAAOptEPositionData	inline
print_score(std::ostream &ostr, Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, core::Size const num_energy_dofs, int const num_ref_dofs, int const num_total_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list) const override	protocols::optimize_weights::PSSMOptEPositionData	virtual
process_rotamers(Multivec const &vars, core::Size const num_energy_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list, core::Size const aa_range, utility::vector1< Real > const &dummy_set, utility::vector1< Real > &best_energy_by_aa, utility::vector1< utility::vector1< Real > > &unweighted_E_dof, Multivec &ref_deriv_weight) const	protocols::optimize_weights::PNatAAOptEPositionData	protected
pssm_probabilities_	protocols::optimize_weights::PSSMOptEPositionData	private
PSSMOptEPositionData()	protocols::optimize_weights::PSSMOptEPositionData
range(ScoreTypes const &free_score_list, ScoreTypes const &fixed_score_list, EnergyMap &lower_bound, EnergyMap &upper_bound) const override	protocols::optimize_weights::PNatAAOptEPositionData	virtual
read_from_binary_file(std::ifstream &infile) override	protocols::optimize_weights::PSSMOptEPositionData	virtual
read_from_file(std::ifstream &infile) override	protocols::optimize_weights::PSSMOptEPositionData	virtual
Real typedef	protocols::optimize_weights::OptEPositionData
rotamer_data_begin() const	protocols::optimize_weights::PNatAAOptEPositionData	inline
rotamer_data_end() const	protocols::optimize_weights::PNatAAOptEPositionData	inline
ScoreTypes typedef	protocols::optimize_weights::OptEPositionData
set_native_aa(AA nat_in)	protocols::optimize_weights::PNatAAOptEPositionData	inline
set_neighbor_count(core::Size nb_in)	protocols::optimize_weights::PNatAAOptEPositionData	inline
set_position(core::Size pos_in)	protocols::optimize_weights::PNatAAOptEPositionData	inline
set_pssm_probabilities(utility::vector1< Real > const &pssm_probs)	protocols::optimize_weights::PSSMOptEPositionData
Size typedef	protocols::optimize_weights::OptEPositionData
size() const override	protocols::optimize_weights::PNatAAOptEPositionData	inlinevirtual
tag(std::string const &tag_in)	protocols::optimize_weights::OptEPositionData
tag() const	protocols::optimize_weights::OptEPositionData
type() const override	protocols::optimize_weights::PSSMOptEPositionData	virtual
update_range(SingleStructureDataCOP structure, ScoreTypes const &free_score_list, ScoreTypes const &fixed_score_list, EnergyMap &lower_bound, EnergyMap &upper_bound) const	protocols::optimize_weights::OptEPositionData	protected
write_to_binary_file(std::ofstream &outfile) const override	protocols::optimize_weights::PSSMOptEPositionData	virtual
write_to_file(std::ofstream &outfile) const override	protocols::optimize_weights::PSSMOptEPositionData	virtual
~OptEPositionData() override	protocols::optimize_weights::OptEPositionData
~PNatAAOptEPositionData() override	protocols::optimize_weights::PNatAAOptEPositionData
~PSSMOptEPositionData() override	protocols::optimize_weights::PSSMOptEPositionData