RNA_DeNovoSetup.cc File Reference

#include <core/import_pose/RNA_DeNovoSetup.hh>
#include <core/import_pose/RNA_DeNovoParameters.hh>
#include <core/import_pose/options/RNA_DeNovoProtocolOptions.hh>
#include <core/import_pose/RNA_HelixAssembler.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/id/AtomID.hh>
#include <core/id/NamedAtomID.hh>
#include <core/id/SequenceMapping.hh>
#include <core/sequence/util.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/func/FadeFunc.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <core/io/rna/RNA_DataReader.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/full_model_info/FullModelParameters.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/pose/subpose_manipulation_util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/pose/rna/leontis_westhof_util.hh>
#include <core/pose/rna/RNA_SecStruct.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/keys/stepwise.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <utility/options/OptionCollection.hh>
#include <utility/options/keys/OptionKeyList.hh>
#include <ObjexxFCL/format.hh>
#include <basic/Tracer.hh>
#include <utility/io/izstream.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::import_pose

Functions
static basic::Tracer	TR ("core.import_pose.RNA_DeNovoSetup")
void	core::import_pose::dump_stems (RNA_SecStruct const &working_secstruct, std::string const &working_sequence, core::pose::full_model_info::FullModelParameters const &full_model_parameters)

Detailed Description

Detailed:

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Function Documentation

static basic::Tracer TR ( "core.import_pose.RNA_DeNovoSetup"  )

static