protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener Class Reference

#include <RNA_ChainClosableGeometryStubBasedScreener.hh>

Inheritance diagram for protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener:

Public Member Functions
	RNA_ChainClosableGeometryStubBasedScreener (modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP chain_closable_geometry_checker, utility::vector1< core::pose::PoseOP > screening_pose_list, core::kinematics::Stub const &moving_res_base_stub, core::Size const reference_res, utility::vector1< core::conformation::ResidueOP > const &moving_rsd_at_origin_list, bool const using_predefined_moving_rsd_list=true)
	RNA_ChainClosableGeometryStubBasedScreener (modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP chain_closable_geometry_checker, utility::vector1< core::pose::PoseOP > screening_pose_list, core::kinematics::Stub const &moving_res_base_stub, core::Size const chain_break_reference_res)
	~RNA_ChainClosableGeometryStubBasedScreener () override
void	get_update (sampler::StepWiseSamplerOP sampler) override
bool	check_screen () override
std::string	name () const override
StepWiseScreenerType	type () const override
Public Member Functions inherited from protocols::stepwise::screener::StepWiseResiduePairScreener
	StepWiseResiduePairScreener (core::Size const res1, core::Size const res2)
	~StepWiseResiduePairScreener () override
void	fast_forward (sampler::StepWiseSamplerOP sampler) override
Public Member Functions inherited from protocols::stepwise::screener::StepWiseScreener
	StepWiseScreener ()
	~StepWiseScreener () override
virtual void	apply_mover (moves::CompositionMoverOP, core::Size const, core::Size const )
virtual void	add_mover (moves::CompositionMoverOP update_mover, moves::CompositionMoverOP restore_mover)
core::Size const &	count () const
void	increment_count ()
void	reset ()
void	set_ok_to_increment (bool const setting)

Private Attributes
modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP	chain_closable_geometry_checker_
utility::vector1 < core::pose::PoseOP >	screening_pose_list_
core::conformation::ResidueOP	moving_rsd_at_origin_
utility::vector1 < core::conformation::ResidueOP >	moving_rsd_at_origin_list_
core::kinematics::Stub const &	moving_res_base_stub_
core::Size const	reference_res_
bool const	using_predefined_moving_rsd_list_

Additional Inherited Members
Protected Attributes inherited from protocols::stepwise::screener::StepWiseResiduePairScreener
core::Size const	res1_
core::Size const	res2_

Constructor & Destructor Documentation

protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::RNA_ChainClosableGeometryStubBasedScreener	(	modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP	chain_closable_geometry_checker,
		utility::vector1< core::pose::PoseOP >	screening_pose_list,
		core::kinematics::Stub const &	moving_res_base_stub,
		core::Size const	reference_res,
		utility::vector1< core::conformation::ResidueOP > const &	moving_rsd_at_origin_list,
		bool const	using_predefined_moving_rsd_list = true
	)

protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::RNA_ChainClosableGeometryStubBasedScreener	(	modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP	chain_closable_geometry_checker,
		utility::vector1< core::pose::PoseOP >	screening_pose_list,
		core::kinematics::Stub const &	moving_res_base_stub,
		core::Size const	chain_break_reference_res
	)

protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::~RNA_ChainClosableGeometryStubBasedScreener ( )

overridedefault

Member Function Documentation

bool protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::check_screen ( )

overridevirtual

Reimplemented from protocols::stepwise::screener::StepWiseScreener.

References chain_closable_geometry_checker_, moving_res_base_stub_, moving_rsd_at_origin_, moving_rsd_at_origin_list_, reference_res_, screening_pose_list_, and using_predefined_moving_rsd_list_.

void protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::get_update ( sampler::StepWiseSamplerOP  sampler )

overridevirtual

Reimplemented from protocols::stepwise::screener::StepWiseScreener.

References moving_rsd_at_origin_, protocols::toolbox::RESIDUE_LIST, protocols::toolbox::RIGID_BODY_WITH_RESIDUE_ALTERNATIVES, and protocols::toolbox::RIGID_BODY_WITH_RESIDUE_LIST.

std::string protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::name ( ) const

inlineoverridevirtual

Implements protocols::stepwise::screener::StepWiseResiduePairScreener.

StepWiseScreenerType protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::type ( ) const

inlineoverridevirtual

Implements protocols::stepwise::screener::StepWiseResiduePairScreener.

References protocols::stepwise::screener::RNA_CHAIN_CLOSABLE_GEOMETRY_STUB_BASED.

Member Data Documentation

modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::chain_closable_geometry_checker_

private

Referenced by check_screen().

core::kinematics::Stub const& protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::moving_res_base_stub_

private

Referenced by check_screen().

core::conformation::ResidueOP protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::moving_rsd_at_origin_

private

Referenced by check_screen(), and get_update().

utility::vector1< core::conformation::ResidueOP > protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::moving_rsd_at_origin_list_

private

Referenced by check_screen().

core::Size const protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::reference_res_

private

Referenced by check_screen().

utility::vector1< core::pose::PoseOP > protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::screening_pose_list_

private

Referenced by check_screen().

bool const protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::using_predefined_moving_rsd_list_

private

Referenced by check_screen().

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The documentation for this class was generated from the following files:

• src/protocols/stepwise/screener/RNA_ChainClosableGeometryStubBasedScreener.hh
• src/protocols/stepwise/screener/RNA_ChainClosableGeometryStubBasedScreener.cc