This class allows the selection for packing (and possibly design) of residues contained in a Loops object as well as the neighbors within a specified cutoff distance, with the default and maximum cutoff at 10.0 A. More...

#include <RestrictToLoopsAndNeighbors.hh>

Inheritance diagram for protocols::simple_task_operations::RestrictToLoopsAndNeighbors:

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Public Types
typedef RestrictToLoops	parent

Public Types inherited from protocols::simple_task_operations::RestrictToLoops
typedef core::pack::task::operation::TaskOperation	parent

Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP

typedef basic::datacache::DataMap	DataMap

typedef pose::Pose	Pose

Public Member Functions
	RestrictToLoopsAndNeighbors ()=default
	Default constructor. More...

core::pack::task::operation::TaskOperationOP	clone () const override
	Return a deep-copied OP. More...

void	parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Configure from a RosettaScripts XML tag. More...

void	apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const override
	Apply this operation to the packer task. More...

bool	include_neighbors () const

void	set_include_neighbors (bool include_neighbors)

bool	design_neighbors () const

void	set_design_neighbors (bool design_neighbors)

core::Real	cutoff_distance () const

void	set_cutoff_distance (core::Real cutoff_distance)

Public Member Functions inherited from protocols::simple_task_operations::RestrictToLoops
	RestrictToLoops ()=default
	Default constructor. More...

bool	design_loop () const
	Return true if design is allowed. More...

void	set_design_loop (bool design_loop)
	Specify whether or not design is allowed. More...

loops::LoopsCOP	loops () const
	Return the loops allowed to pack. More...

void	set_loops (loops::LoopsCOP loops)
	Specify the loops that will be allowed to pack. More...

void	set_loops_from_file (std::string loops_file)
	Specify the loops that will be allowed to pack. More...

bool	restrict_only_design_to_loops () const
	Return true if we are restricting to only design. AKA RestrictDesignToLoops. More...

void	set_restrict_only_design_to_loops (bool restrict_only_design)
	Specify whether to restrict only design to loops/neighbors AKA RestrictDesignToLoops. Does not disable packing for any residue. Implies and sets design_loop to true. More...

Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

static std::string	keyname ()

Static Public Member Functions inherited from protocols::simple_task_operations::RestrictToLoops
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

static void	provide_attributes (utility::tag::AttributeList &attributes)

static std::string	keyname ()

Private Attributes
bool	include_neighbors_ = true

bool	design_neighbors_ = false

core::Real	cutoff_distance_ = 10.0

Additional Inherited Members
Protected Member Functions inherited from protocols::simple_task_operations::RestrictToLoops
void	apply_helper (core::pose::Pose const &pose, core::pack::task::PackerTask &task, bool include_neighbors, core::Real cutoff_distance, bool design_neighbors) const
	Helper function to prevent code duplication in subclasses. More...

Detailed Description

This class allows the selection for packing (and possibly design) of residues contained in a Loops object as well as the neighbors within a specified cutoff distance, with the default and maximum cutoff at 10.0 A.

Member Typedef Documentation

typedef RestrictToLoops protocols::simple_task_operations::RestrictToLoopsAndNeighbors::parent

Constructor & Destructor Documentation

protocols::simple_task_operations::RestrictToLoopsAndNeighbors::RestrictToLoopsAndNeighbors ( )

default

Default constructor.

Member Function Documentation

void protocols::simple_task_operations::RestrictToLoopsAndNeighbors::apply	(	core::pose::Pose const &	pose,
		core::pack::task::PackerTask &	task
	)		const

overridevirtual

Apply this operation to the packer task.

Reimplemented from protocols::simple_task_operations::RestrictToLoops.

TaskOperationOP protocols::simple_task_operations::RestrictToLoopsAndNeighbors::clone ( ) const

overridevirtual

Return a deep-copied OP.

Reimplemented from protocols::simple_task_operations::RestrictToLoops.

core::Real protocols::simple_task_operations::RestrictToLoopsAndNeighbors::cutoff_distance ( ) const

bool protocols::simple_task_operations::RestrictToLoopsAndNeighbors::design_neighbors ( ) const

bool protocols::simple_task_operations::RestrictToLoopsAndNeighbors::include_neighbors ( ) const

static std::string protocols::simple_task_operations::RestrictToLoopsAndNeighbors::keyname ( )

inlinestatic

Referenced by protocols::simple_task_operations::RestrictToLoopsAndNeighborsCreator::keyname().

void protocols::simple_task_operations::RestrictToLoopsAndNeighbors::parse_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data
	)

overridevirtual

Configure from a RosettaScripts XML tag.

Reimplemented from protocols::simple_task_operations::RestrictToLoops.

void protocols::simple_task_operations::RestrictToLoopsAndNeighbors::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References protocols::simple_task_operations::RestrictToLoops::provide_attributes(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::simple_task_operations::RestrictToLoopsAndNeighborsCreator::provide_xml_schema().

void protocols::simple_task_operations::RestrictToLoopsAndNeighbors::set_cutoff_distance ( core::Real cutoff_distance )

void protocols::simple_task_operations::RestrictToLoopsAndNeighbors::set_design_neighbors ( bool design_neighbors )

void protocols::simple_task_operations::RestrictToLoopsAndNeighbors::set_include_neighbors ( bool include_neighbors )

Member Data Documentation

core::Real protocols::simple_task_operations::RestrictToLoopsAndNeighbors::cutoff_distance_ = 10.0

private

bool protocols::simple_task_operations::RestrictToLoopsAndNeighbors::design_neighbors_ = false

private

bool protocols::simple_task_operations::RestrictToLoopsAndNeighbors::include_neighbors_ = true

private

The documentation for this class was generated from the following files:

src/protocols/simple_task_operations/RestrictToLoopsAndNeighbors.hh
src/protocols/simple_task_operations/RestrictToLoopsAndNeighbors.cc

Public Types

Public Member Functions

Static Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation