protocols::grafting::AnchoredGraftMover Member List

This is the complete list of members for protocols::grafting::AnchoredGraftMover, including all inherited members.

AnchoredGraftMover()	protocols::grafting::AnchoredGraftMover
AnchoredGraftMover(core::Size const start, core::Size const end, bool copy_pdbinfo=false)	protocols::grafting::AnchoredGraftMover
AnchoredGraftMover(core::Size const start, core::Size const end, core::pose::Pose const &piece, core::Size Nter_overhang_length=0, core::Size Cter_overhang_length=0, bool copy_pdbinfo=false)	protocols::grafting::AnchoredGraftMover
apply(core::pose::Pose &pose) override	protocols::grafting::AnchoredGraftMover	virtual
cen_scorefxn() const	protocols::grafting::AnchoredGraftMover	protected
cen_scorefxn_	protocols::grafting::AnchoredGraftMover	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::grafting::AnchoredGraftMover	virtual
complex_type_generator_for_anchored_graft_mover(utility::tag::XMLSchemaDefinition &)	protocols::grafting::AnchoredGraftMover	static
copy_pdbinfo(bool copy_pdbinfo)	protocols::grafting::GraftMoverBase
copy_pdbinfo() const	protocols::grafting::GraftMoverBase	inline
create()	protocols::moves::Mover	virtual
Cter_insert_flexibility() const	protocols::grafting::AnchoredGraftMover	protected
Cter_insert_flexibility_	protocols::grafting::AnchoredGraftMover	private
Cter_loop_end() const	protocols::grafting::AnchoredGraftMover	protected
Cter_loop_end_	protocols::grafting::AnchoredGraftMover	private
Cter_loop_start() const	protocols::grafting::AnchoredGraftMover	protected
Cter_loop_start_	protocols::grafting::AnchoredGraftMover	private
Cter_overhang_length()	protocols::grafting::GraftMoverBase	protected
Cter_overhang_length(core::Size overhang)	protocols::grafting::GraftMoverBase	protected
Cter_scaffold_flexibility() const	protocols::grafting::AnchoredGraftMover	protected
Cter_scaffold_flexibility_	protocols::grafting::AnchoredGraftMover	private
cycles() const	protocols::grafting::AnchoredGraftMover	protected
cycles_	protocols::grafting::AnchoredGraftMover	private
end()	protocols::grafting::GraftMoverBase
end(core::Size end)	protocols::grafting::GraftMoverBase	protected
fa_scorefxn() const	protocols::grafting::AnchoredGraftMover	protected
fa_scorefxn_	protocols::grafting::AnchoredGraftMover	private
final_repack(bool final_repack)	protocols::grafting::AnchoredGraftMover
final_repack()	protocols::grafting::AnchoredGraftMover
final_repack_	protocols::grafting::AnchoredGraftMover	private
fresh_instance() const override	protocols::grafting::AnchoredGraftMover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_Cter_loop_end()	protocols::grafting::AnchoredGraftMover
get_cterm_insert_flexibility()	protocols::grafting::AnchoredGraftMover
get_cterm_scaffold_flexibility()	protocols::grafting::AnchoredGraftMover
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_loops()	protocols::grafting::AnchoredGraftMover	inline
get_name() const override	protocols::grafting::AnchoredGraftMover	virtual
get_native_pose() const	protocols::moves::Mover
get_nterm_insert_flexibility()	protocols::grafting::AnchoredGraftMover
get_nterm_scaffold_flexibility()	protocols::grafting::AnchoredGraftMover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
graft_is_closed() const	protocols::grafting::AnchoredGraftMover	inline
graft_is_closed_	protocols::grafting::AnchoredGraftMover	private
GraftMoverBase(std::string mover_name)	protocols::grafting::GraftMoverBase
GraftMoverBase(core::Size const start, core::Size const end, std::string mover_name)	protocols::grafting::GraftMoverBase
GraftMoverBase(core::Size const start, core::Size const end, std::string mover_name, core::pose::Pose const &piece, core::Size Nter_overhang_length=0, core::Size Cter_overhang_length=0)	protocols::grafting::GraftMoverBase
idealize_insert(bool idealize)	protocols::grafting::AnchoredGraftMover
idealize_insert() const	protocols::grafting::AnchoredGraftMover	inline
idealize_insert_	protocols::grafting::AnchoredGraftMover	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
insert_movemap_	protocols::grafting::AnchoredGraftMover	private
insert_movemap_factory_	protocols::grafting::AnchoredGraftMover	private
insert_piece(core::pose::Pose const &pose, core::pose::Pose &piece)	protocols::grafting::GraftMoverBase	protected
insertion_length()	protocols::grafting::GraftMoverBase
insertion_length(core::Size insertion_length)	protocols::grafting::GraftMoverBase	protected
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
loops_	protocols::grafting::AnchoredGraftMover	private
mintype() const	protocols::grafting::AnchoredGraftMover	protected
mintype_	protocols::grafting::AnchoredGraftMover	private
movemap(core::kinematics::MoveMapOP movemap)	protocols::grafting::AnchoredGraftMover	protected
movemap() const	protocols::grafting::AnchoredGraftMover	protected
movemap_	protocols::grafting::AnchoredGraftMover	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::grafting::AnchoredGraftMover	static
name()	protocols::moves::Mover	inlinestatic
neighbor_dis(core::Real dis)	protocols::grafting::AnchoredGraftMover
neighbor_dis() const	protocols::grafting::AnchoredGraftMover
neighbor_dis_	protocols::grafting::AnchoredGraftMover	private
Nter_insert_flexibility() const	protocols::grafting::AnchoredGraftMover	protected
Nter_insert_flexibility_	protocols::grafting::AnchoredGraftMover	private
Nter_loop_end() const	protocols::grafting::AnchoredGraftMover	protected
Nter_loop_end_	protocols::grafting::AnchoredGraftMover	private
Nter_loop_start() const	protocols::grafting::AnchoredGraftMover	protected
Nter_loop_start_	protocols::grafting::AnchoredGraftMover	private
Nter_overhang_length()	protocols::grafting::GraftMoverBase	protected
Nter_overhang_length(core::Size overhang)	protocols::grafting::GraftMoverBase	protected
Nter_scaffold_flexibility() const	protocols::grafting::AnchoredGraftMover	protected
Nter_scaffold_flexibility_	protocols::grafting::AnchoredGraftMover	private
original_end()	protocols::grafting::GraftMoverBase
original_end(core::Size original_end)	protocols::grafting::GraftMoverBase	protected
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override	protocols::grafting::AnchoredGraftMover	virtual
piece()	protocols::grafting::GraftMoverBase	protected
piece(core::pose::PoseCOP piece)	protocols::grafting::GraftMoverBase	protected
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const override	protocols::grafting::AnchoredGraftMover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::grafting::AnchoredGraftMover	static
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
scaffold_end() const	protocols::grafting::AnchoredGraftMover	protected
scaffold_end_	protocols::grafting::AnchoredGraftMover	private
scaffold_movemap_	protocols::grafting::AnchoredGraftMover	private
scaffold_movemap_factory_	protocols::grafting::AnchoredGraftMover	private
scaffold_start() const	protocols::grafting::AnchoredGraftMover	protected
scaffold_start_	protocols::grafting::AnchoredGraftMover	private
set_cen_scorefunction(core::scoring::ScoreFunctionCOP score)	protocols::grafting::AnchoredGraftMover	virtual
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_cycles(core::Size cycles)	protocols::grafting::AnchoredGraftMover
set_default_cen_scorefunction()	protocols::grafting::AnchoredGraftMover	protectedvirtual
set_default_fa_scorefunction()	protocols::grafting::AnchoredGraftMover	protectedvirtual
set_default_movemap()	protocols::grafting::AnchoredGraftMover	protectedvirtual
set_defaults()	protocols::grafting::AnchoredGraftMover
set_fa_scorefunction(core::scoring::ScoreFunctionCOP score)	protocols::grafting::AnchoredGraftMover	virtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_insert_flexibility(core::Size const Nter_insert_flexibility, core::Size const Cter_insert_flexibility)	protocols::grafting::AnchoredGraftMover
set_insert_region(core::Size const start, core::Size const end)	protocols::grafting::GraftMoverBase	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_loops(protocols::loops::LoopsOP loops)	protocols::grafting::AnchoredGraftMover	protected
set_mintype(std::string mintype)	protocols::grafting::AnchoredGraftMover
set_movemaps(core::kinematics::MoveMapCOP const scaffold_mm, core::kinematics::MoveMapCOP const insert_mm)	protocols::grafting::AnchoredGraftMover	virtual
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_piece(core::pose::Pose const &piece, core::Size Nter_overhang_length, core::Size Cter_overhang_length)	protocols::grafting::GraftMoverBase
set_regions_from_flexibility()	protocols::grafting::AnchoredGraftMover	protectedvirtual
set_regions_from_movemap(core::pose::Pose &pose)	protocols::grafting::AnchoredGraftMover	protectedvirtual
set_scaffold_flexibility(core::Size const Nter_scaffold_flexibility, core::Size const Cter_scaffold_flexibility)	protocols::grafting::AnchoredGraftMover
set_skip_sampling(bool skip_sampling)	protocols::grafting::AnchoredGraftMover
set_test_control_mode(bool test_control_mode)	protocols::grafting::AnchoredGraftMover	protected
set_type(std::string const &setting)	protocols::moves::Mover	inline
setup_default_min_mover() const	protocols::grafting::AnchoredGraftMover	protectedvirtual
setup_default_small_mover() const	protocols::grafting::AnchoredGraftMover	protectedvirtual
setup_movemap_and_regions(core::pose::Pose &pose)	protocols::grafting::AnchoredGraftMover	protectedvirtual
setup_scorefunction()	protocols::grafting::AnchoredGraftMover	protected
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
skip_sampling() const	protocols::grafting::AnchoredGraftMover	protected
skip_sampling_	protocols::grafting::AnchoredGraftMover	private
start()	protocols::grafting::GraftMoverBase
start(core::Size start)	protocols::grafting::GraftMoverBase	protected
stop_at_closure(bool stop_at_closure)	protocols::grafting::AnchoredGraftMover
stop_at_closure()	protocols::grafting::AnchoredGraftMover
stop_at_closure_	protocols::grafting::AnchoredGraftMover	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_control_mode() const	protocols::grafting::AnchoredGraftMover	protected
test_control_mode_	protocols::grafting::AnchoredGraftMover	private
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
use_default_movemap(bool use_default_movemap)	protocols::grafting::AnchoredGraftMover	protected
use_default_movemap() const	protocols::grafting::AnchoredGraftMover	protected
use_default_movemap_	protocols::grafting::AnchoredGraftMover	private