RNA_FragmentHomologyExclusion.cc File Reference

#include <core/fragment/rna/RNA_FragmentHomologyExclusion.hh>
#include <core/fragment/rna/FragmentLibrary.hh>
#include <core/fragment/rna/TorsionSet.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/chemical/util.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueType.hh>
#include <core/pose/copydofs/util.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/id/AtomID.hh>
#include <core/pose/rna/util.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/fragment/rna/FullAtomRNA_Fragments.hh>
#include <core/pose/toolbox/AtomLevelDomainMap.hh>
#include <core/types.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <set>

Namespaces
	core
	A class for reading in the atom type properties.
	core::fragment
	core::fragment::rna

Functions
utility::vector1< std::pair < Size, std::string > >	core::fragment::rna::split_segments_longer_than_6mers (utility::vector1< std::pair< Size, std::string > > const &secstruct_segments)
void	core::fragment::rna::obtain_secstruct_segments (utility::vector1< std::pair< Size, std::string > > &secstruct_segments, std::string const &secstruct)
std::string	core::fragment::rna::figure_out_secstruct (pose::Pose &pose)
utility::vector1< core::Size >	core::fragment::rna::analyze_for_homology (std::string const &in_file, RNA_Fragments const &fragments, std::string const &exclusion_match_type="MATCH_EXACT")