| acknowledge_partial_state_change(int node_ind, int new_state, int bumped_recent_history_index, int new_state_recent_history_index) | core::pack::interaction_graph::SymmLinearMemEdge | |
| acknowledge_state_change(int node_ind, int new_state, int bumped_recent_history_index, int new_state_recent_history_index, core::PackerEnergy &new_energy) | core::pack::interaction_graph::SymmLinearMemEdge | |
| acknowledge_state_zeroed(int node_ind) | core::pack::interaction_graph::SymmLinearMemEdge | |
| acknowledge_substitution(int substituted_node_index, core::PackerEnergy const curr_state_energy, int nodes_new_state, int bumped_recent_history_index, int new_state_recent_history_index, int neighbors_curr_state) | core::pack::interaction_graph::SymmLinearMemEdge | inline |
| add_GlyCorrection_values(int node_not_necessarily_glycine, int state, core::PackerEnergy bb_nonglybb_E, core::PackerEnergy bb_glybb_E, core::PackerEnergy sc_nonglybb_E, core::PackerEnergy sc_glybb_E) | core::pack::interaction_graph::SymmOnTheFlyEdge | |
| add_ProCorrection_values(int node_not_necessarily_proline, int state, core::PackerEnergy bb_nonprobb_E, core::PackerEnergy bb_probb_E, core::PackerEnergy sc_nonprobb_E, core::PackerEnergy sc_probb_E) | core::pack::interaction_graph::SymmOnTheFlyEdge | |
| alt_state_energy_ | core::pack::interaction_graph::SymmLinearMemEdge | private |
| count_dynamic_memory() const override | core::pack::interaction_graph::SymmLinearMemEdge | virtual |
| count_static_memory() const override | core::pack::interaction_graph::SymmLinearMemEdge | virtual |
| curr_state_energy_ | core::pack::interaction_graph::SymmLinearMemEdge | private |
| declare_energies_final() override | core::pack::interaction_graph::SymmLinearMemEdge | virtual |
| edge_weight() const | core::pack::interaction_graph::EdgeBase | inline |
| edge_weight(Real) | core::pack::interaction_graph::EdgeBase | protected |
| EdgeBase(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::EdgeBase | |
| eval_type(int node_index) const | core::pack::interaction_graph::SymmOnTheFlyEdge | inline |
| FixedBBEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::FixedBBEdge | inline |
| force_aa_neighbors(int, int) override | core::pack::interaction_graph::SymmOnTheFlyEdge | inlinevirtual |
| force_all_aa_neighbors() override | core::pack::interaction_graph::SymmOnTheFlyEdge | inlinevirtual |
| get_current_two_body_energy() const | core::pack::interaction_graph::SymmLinearMemEdge | |
| get_edges_position_in_nodes_edge_vector(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_energy_following_partial_state_assignment() | core::pack::interaction_graph::SymmLinearMemEdge | |
| get_energy_for_alt_state(bool store_rpes, int changing_node_index, int alternate_state, int alternate_state_recent_history_index, int other_node_curr_state, int other_node_state_recent_history_index) | core::pack::interaction_graph::SymmLinearMemEdge | |
| get_first_node_ind() const | core::pack::interaction_graph::EdgeBase | |
| get_glycine_correction(int which_node, int state) const | core::pack::interaction_graph::SymmOnTheFlyEdge | inlineprotected |
| get_glycine_correction_for_node(int node_ind, int state) const | core::pack::interaction_graph::SymmOnTheFlyEdge | inline |
| get_node(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_node(int index) | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_node_index(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_num_states_for_node(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_otf_node(int which_node) const | core::pack::interaction_graph::SymmOnTheFlyEdge | inlineprotected |
| get_otf_node(int which_node) | core::pack::interaction_graph::SymmOnTheFlyEdge | inlineprotected |
| get_otf_owner() const | core::pack::interaction_graph::SymmOnTheFlyEdge | inlineprotected |
| get_otf_owner() | core::pack::interaction_graph::SymmOnTheFlyEdge | inlineprotected |
| get_other_ind(int callers_index) const | core::pack::interaction_graph::EdgeBase | |
| get_other_node(int callers_index) const | core::pack::interaction_graph::EdgeBase | |
| get_owner() const | core::pack::interaction_graph::EdgeBase | inline |
| get_owner() | core::pack::interaction_graph::EdgeBase | inline |
| get_proline_correction(int which_node, int state) const | core::pack::interaction_graph::SymmOnTheFlyEdge | inlineprotected |
| get_proline_correction_for_node(int node_ind, int state) const | core::pack::interaction_graph::SymmOnTheFlyEdge | inline |
| get_second_node_ind() const | core::pack::interaction_graph::EdgeBase | |
| get_sparse_aa_info(int, int) const override | core::pack::interaction_graph::SymmOnTheFlyEdge | inlinevirtual |
| get_symmlinmem_ig_owner() const | core::pack::interaction_graph::SymmLinearMemEdge | inline |
| get_symmlinmem_ig_owner() | core::pack::interaction_graph::SymmLinearMemEdge | inline |
| get_symmlinmem_node(int index) const | core::pack::interaction_graph::SymmLinearMemEdge | inline |
| get_symmlinmem_node(int index) | core::pack::interaction_graph::SymmLinearMemEdge | inline |
| get_two_body_energy(int const node1state, int const node2state) const override | core::pack::interaction_graph::SymmLinearMemEdge | virtual |
| get_two_body_table_size() const | core::pack::interaction_graph::SymmLinearMemEdge | |
| handle_bumped_recent_history_state_for_node(int node_substituted, int node_not_substituted, int bumped_recent_history_index) | core::pack::interaction_graph::SymmLinearMemEdge | private |
| long_range_interactions_exist() const | core::pack::interaction_graph::SymmOnTheFlyEdge | inline |
| mark_edge_for_deletion() | core::pack::interaction_graph::EdgeBase | inlineprotected |
| marked_for_deletion() const | core::pack::interaction_graph::EdgeBase | inline |
| NOT_YET_COMPUTED_ENERGY | core::pack::interaction_graph::SymmLinearMemEdge | static |
| note_long_range_interactions_exist() | core::pack::interaction_graph::SymmOnTheFlyEdge | inline |
| note_short_range_interactions_exist() | core::pack::interaction_graph::SymmOnTheFlyEdge | inline |
| operator=(SymmLinearMemEdge const &) | core::pack::interaction_graph::SymmLinearMemEdge | private |
| partial_state_assignment_ | core::pack::interaction_graph::SymmLinearMemEdge | private |
| prepare_for_simulated_annealing() override | core::pack::interaction_graph::SymmLinearMemEdge | virtual |
| preped_for_sim_annealing_ | core::pack::interaction_graph::SymmLinearMemEdge | private |
| print_current_energy() const | core::pack::interaction_graph::SymmLinearMemEdge | |
| reset_state_energies(int node_index, int state, int recent_history_id) | core::pack::interaction_graph::SymmLinearMemEdge | |
| residues_adjacent_for_subunit_pair(int which_node, int other_node_subunit, int whichnode_restypegroup, int othernode_restypegroup) const | core::pack::interaction_graph::SymmOnTheFlyEdge | |
| same_edge(int node1, int node2) const | core::pack::interaction_graph::EdgeBase | |
| set_edge_weight(Real weight) override | core::pack::interaction_graph::SymmLinearMemEdge | virtual |
| set_pos_in_node_edgevector(int callers_index, int position) | core::pack::interaction_graph::EdgeBase | |
| set_pos_in_owners_list(std::list< EdgeBase * >::iterator edge_iterator) | core::pack::interaction_graph::EdgeBase | |
| set_residues_adjacent_for_subunit_pair(int which_node, int other_node_subunit) | core::pack::interaction_graph::SymmOnTheFlyEdge | |
| set_sparse_aa_info(ObjexxFCL::FArray2_bool const &) override | core::pack::interaction_graph::SymmOnTheFlyEdge | inlinevirtual |
| short_range_interactions_exist() const | core::pack::interaction_graph::SymmOnTheFlyEdge | inline |
| store_curr_state_energy() | core::pack::interaction_graph::SymmLinearMemEdge | private |
| store_rpes_ | core::pack::interaction_graph::SymmLinearMemEdge | private |
| stored_rpes_ | core::pack::interaction_graph::SymmLinearMemEdge | private |
| SymmLinearMemEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::SymmLinearMemEdge | |
| SymmLinearMemEdge() | core::pack::interaction_graph::SymmLinearMemEdge | private |
| SymmLinearMemEdge(SymmLinearMemEdge const &) | core::pack::interaction_graph::SymmLinearMemEdge | private |
| SymmOnTheFlyEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::SymmOnTheFlyEdge | |
| which_node(int node_index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| wipe(int node) | core::pack::interaction_graph::SymmLinearMemEdge | private |
| ~EdgeBase() | core::pack::interaction_graph::EdgeBase | virtual |
| ~FixedBBEdge() override | core::pack::interaction_graph::FixedBBEdge | inline |
| ~SymmLinearMemEdge() override | core::pack::interaction_graph::SymmLinearMemEdge | |
| ~SymmOnTheFlyEdge() override | core::pack::interaction_graph::SymmOnTheFlyEdge | |
1.8.7