| aa_composition_setup_helpers_ | core::scoring::ScoringManager | mutableprivate |
| add_memb_etable(std::string const &name, etable::MembEtableOP etable) | core::scoring::ScoringManager | |
| atom_vdw_ | core::scoring::ScoringManager | mutableprivate |
| carbohydrate_omega_preferences_function_ | core::scoring::ScoringManager | mutableprivate |
| carbon_hbond_potential_ | core::scoring::ScoringManager | mutableprivate |
| cen_disulfide_potential_ | core::scoring::ScoringManager | mutableprivate |
| cen_hb_potential_ | core::scoring::ScoringManager | mutableprivate |
| cen_rot_pair_potential_ | core::scoring::ScoringManager | mutableprivate |
| CHI_energy_function_ | core::scoring::ScoringManager | mutableprivate |
| cp_rep_map_byname_ | core::scoring::ScoringManager | mutableprivate |
| create_aa_composition_energy_setup_instance(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
| create_atomvdw_instance(std::string const &atom_type_set_name) | core::scoring::ScoringManager | privatestatic |
| create_carbon_hbond_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_cenhbpotential_instance() | core::scoring::ScoringManager | privatestatic |
| create_cenrotenvpair_instance() | core::scoring::ScoringManager | privatestatic |
| create_centroid_disulfide_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_chi_energy_function_instance() | core::scoring::ScoringManager | privatestatic |
| create_database_occsolene_instance(std::string const &atom_type_set_name, core::Real const &min_occ_energy) | core::scoring::ScoringManager | privatestatic |
| create_ddp_lookup_instance() | core::scoring::ScoringManager | privatestatic |
| create_disulfide_matching_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_dna_bform_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_dna_dihedralpotential_instance() | core::scoring::ScoringManager | privatestatic |
| create_dna_directreadoutpotential_instance() | core::scoring::ScoringManager | privatestatic |
| create_dna_envpairpotential_instance() | core::scoring::ScoringManager | privatestatic |
| create_dna_torsion_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_dnabase_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_envpairpotential_instance() | core::scoring::ScoringManager | privatestatic |
| create_etable_instance(etable::EtableOP table_in) | core::scoring::ScoringManager | privatestatic |
| create_facts_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_file_contents_instance(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
| create_fullatom_disulfide_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_genborn_instance() | core::scoring::ScoringManager | privatestatic |
| create_generic_bonded_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_hxl_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_mainchain_scoretable_instance(core::chemical::mainchain_potential::MainchainScoreTableOP table_in) | core::scoring::ScoringManager | privatestatic |
| create_memb_etable_instance(std::string const &table_id) | core::scoring::ScoringManager | privatestatic |
| create_memb_etable_instance_silly(etable::MembEtableOP table_in) | core::scoring::ScoringManager | privatestatic |
| create_membrane_data_instance() | core::scoring::ScoringManager | privatestatic |
| create_membrane_fa_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_membrane_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_mhc_csv_contents(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
| create_mhc_epitope_energy_setup_instance(std::string const &filename) | core::scoring::ScoringManager | static |
| create_mhc_map_from_db(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
| create_mhc_matrix_contents(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
| create_mm_bondangle_library_instance() | core::scoring::ScoringManager | privatestatic |
| create_mm_bondlength_library_instance() | core::scoring::ScoringManager | privatestatic |
| create_mm_lj_energy_table_instance() | core::scoring::ScoringManager | privatestatic |
| create_mm_lj_library_instance() | core::scoring::ScoringManager | privatestatic |
| create_mm_torsion_library_instance() | core::scoring::ScoringManager | privatestatic |
| create_multipole_elec_instance(methods::EnergyMethodOptions const &options) | core::scoring::ScoringManager | privatestatic |
| create_netcharge_energy_setup_instance(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
| create_nmer_pssm(std::string const &filename, core::Size nmer_length) | core::scoring::ScoringManager | privatestatic |
| create_nmer_svm_aa_matrix(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
| create_nmer_svm_rank(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
| create_nvlookup_instance() | core::scoring::ScoringManager | privatestatic |
| create_omega_preferences_function_instance() | core::scoring::ScoringManager | privatestatic |
| create_omegatether_instance() | core::scoring::ScoringManager | privatestatic |
| create_OneDDistPotential(std::string const &potential_file_name) | core::scoring::ScoringManager | privatestatic |
| create_orbitals_lookup_instance() | core::scoring::ScoringManager | privatestatic |
| create_p_aa_abego3_instance() | core::scoring::ScoringManager | privatestatic |
| create_p_aa_instance() | core::scoring::ScoringManager | privatestatic |
| create_p_aa_ss_instance() | core::scoring::ScoringManager | privatestatic |
| create_pairE_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_point_water_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_poisson_boltzmann_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_proq_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_rama2b_instance() | core::scoring::ScoringManager | privatestatic |
| create_rama_instance() | core::scoring::ScoringManager | privatestatic |
| create_ramapp_instance() | core::scoring::ScoringManager | privatestatic |
| create_rna_atomvdw_instance() | core::scoring::ScoringManager | privatestatic |
| create_rna_chemshiftpotential_instance() | core::scoring::ScoringManager | privatestatic |
| create_rna_dms_lowrespotential_instance() | core::scoring::ScoringManager | privatestatic |
| create_rna_dms_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_rna_lowresolutionpotential_instance(std::string const &database_file) | core::scoring::ScoringManager | privatestatic |
| create_rna_suitepotential_instance(bool const &calculate_suiteness_bonus, std::string const &suiteness_bonus) | core::scoring::ScoringManager | privatestatic |
| create_rnp_lowrespairdistpotential_instance() | core::scoring::ScoringManager | privatestatic |
| create_rnp_lowrespotential_instance() | core::scoring::ScoringManager | privatestatic |
| create_rnp_lowresstackdata_instance() | core::scoring::ScoringManager | privatestatic |
| create_sasa_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_secondarystructurepotential_instance() | core::scoring::ScoringManager | privatestatic |
| create_sixdtransrotpotential_instance(std::string const &database_file) | core::scoring::ScoringManager | privatestatic |
| create_smoothenvpair_instance() | core::scoring::ScoringManager | privatestatic |
| create_split_unfolded_2body_potential_instance(std::string const &label_type, std::string const &value_type, std::string const &score_func_type) | core::scoring::ScoringManager | privatestatic |
| create_svm_rosetta(std::string const &filename) | core::scoring::ScoringManager | privatestatic |
| create_tna_suitepotential_instance() | core::scoring::ScoringManager | privatestatic |
| create_unfolded_state_potential_instance(std::string const &type) | core::scoring::ScoringManager | privatestatic |
| create_vdw_tinker_potential_instance() | core::scoring::ScoringManager | privatestatic |
| create_water_adduct_hbond_potential_instance() | core::scoring::ScoringManager | privatestatic |
| DDP_lookup_table_ | core::scoring::ScoringManager | mutableprivate |
| disulfide_matching_potential_ | core::scoring::ScoringManager | mutableprivate |
| DNA_base_potential_ | core::scoring::ScoringManager | mutableprivate |
| dna_dihedral_potential_ | core::scoring::ScoringManager | mutableprivate |
| dna_dr_potential_ | core::scoring::ScoringManager | mutableprivate |
| dna_env_pair_potential_ | core::scoring::ScoringManager | mutableprivate |
| dna_torsion_potential_ | core::scoring::ScoringManager | mutableprivate |
| dnabform_ | core::scoring::ScoringManager | mutableprivate |
| energy_method(ScoreType const &t, methods::EnergyMethodOptions const &options) const | core::scoring::ScoringManager | |
| env_pair_potential_ | core::scoring::ScoringManager | mutableprivate |
| etable(methods::EnergyMethodOptions const &options_in) const | core::scoring::ScoringManager | |
| etable(etable::EtableOptions const &options_in) const | core::scoring::ScoringManager | |
| etable(std::string const &etable_id) const | core::scoring::ScoringManager | |
| etables_by_options_ | core::scoring::ScoringManager | mutableprivate |
| fa_disulfide_potential_ | core::scoring::ScoringManager | mutableprivate |
| factory_register(methods::EnergyMethodCreatorOP creator) | core::scoring::ScoringManager | |
| facts_potential_ | core::scoring::ScoringManager | mutableprivate |
| gen_born_potential_ | core::scoring::ScoringManager | mutableprivate |
| generic_bonded_potential_ | core::scoring::ScoringManager | mutableprivate |
| get_AtomVDW(std::string const &atom_type_set_name) const | core::scoring::ScoringManager | |
| get_CarbonHBondPotential() const | core::scoring::ScoringManager | |
| get_CenHBPotential() const | core::scoring::ScoringManager | |
| get_CenRotEnvPairPotential() const | core::scoring::ScoringManager | |
| get_CentroidDisulfidePotential() const | core::scoring::ScoringManager | |
| get_CHIEnergyFunction() const | core::scoring::ScoringManager | |
| get_cloned_aa_comp_setup_helpers(core::scoring::methods::EnergyMethodOptions const &options) const | core::scoring::ScoringManager | |
| get_cloned_mhc_epitope_setup_helpers(core::scoring::methods::EnergyMethodOptions const &options) const | core::scoring::ScoringManager | |
| get_cloned_netcharge_setup_helpers(core::scoring::methods::EnergyMethodOptions const &options) const | core::scoring::ScoringManager | |
| get_cp_rep_map_byname() const | core::scoring::ScoringManager | |
| get_DatabaseOccSolEne(std::string const &atom_type_set_name, Real const &min_occ_energy) const | core::scoring::ScoringManager | |
| get_DDPLookupTable() const | core::scoring::ScoringManager | |
| get_DirectReadoutPotential() const | core::scoring::ScoringManager | |
| get_DisulfideMatchingPotential() const | core::scoring::ScoringManager | |
| get_DNA_BasePotential() const | core::scoring::ScoringManager | |
| get_DNA_DihedralPotential() const | core::scoring::ScoringManager | |
| get_DNA_EnvPairPotential() const | core::scoring::ScoringManager | |
| get_DNABFormPotential() const | core::scoring::ScoringManager | |
| get_DNATorsionPotential() const | core::scoring::ScoringManager | |
| get_EnvPairPotential() const | core::scoring::ScoringManager | |
| get_FACTSPotential() const | core::scoring::ScoringManager | |
| get_FullatomDisulfidePotential() const | core::scoring::ScoringManager | |
| get_GenBornPotential() const | core::scoring::ScoringManager | |
| get_GenericBondedPotential() const | core::scoring::ScoringManager | |
| get_HydroxylTorsionPotential() const | core::scoring::ScoringManager | |
| get_LoopCloseSixDPotential(std::string const &database_file) const | core::scoring::ScoringManager | |
| get_Membrane_FAPotential() const | core::scoring::ScoringManager | |
| get_MembraneData() const | core::scoring::ScoringManager | |
| get_MembranePotential() const | core::scoring::ScoringManager | |
| get_mhc_csv_contents(std::string const &filename) const | core::scoring::ScoringManager | |
| get_mhc_map_from_db(std::string const &filename) const | core::scoring::ScoringManager | |
| get_mhc_matrix_contents(std::string const &filename) const | core::scoring::ScoringManager | |
| get_MMBondAngleLibrary() const | core::scoring::ScoringManager | |
| get_MMBondLengthLibrary() const | core::scoring::ScoringManager | |
| get_MMLJEnergyTable() const | core::scoring::ScoringManager | |
| get_MMLJLibrary() const | core::scoring::ScoringManager | |
| get_MMTorsionLibrary() const | core::scoring::ScoringManager | |
| get_MultipoleElecPotential(methods::EnergyMethodOptions const &options) const | core::scoring::ScoringManager | |
| get_nmer_pssm(std::string const &filename, core::Size nmer_length) const | core::scoring::ScoringManager | |
| get_nmer_svm(std::string const &filename) const | core::scoring::ScoringManager | |
| get_nmer_svm_aa_matrix(std::string const &filename) const | core::scoring::ScoringManager | |
| get_nmer_svm_list_file_contents(std::string const &filename) const | core::scoring::ScoringManager | |
| get_nmer_svm_rank(std::string const &filename) const | core::scoring::ScoringManager | |
| get_nmer_svm_rank_list_file_contents(std::string const &filename) const | core::scoring::ScoringManager | |
| get_NVLookupTable() const | core::scoring::ScoringManager | |
| get_OmegaPreferencesFunction() const | core::scoring::ScoringManager | |
| get_OmegaTether() const | core::scoring::ScoringManager | |
| get_OneDDistPotential(std::string const &potential_file_name) const | core::scoring::ScoringManager | |
| get_OrbitalsLookupTable() const | core::scoring::ScoringManager | |
| get_P_AA() const | core::scoring::ScoringManager | |
| get_P_AA_ABEGO3() const | core::scoring::ScoringManager | |
| get_P_AA_ss() const | core::scoring::ScoringManager | |
| get_PairEPotential() const | core::scoring::ScoringManager | |
| get_PointWaterPotential() const | core::scoring::ScoringManager | |
| get_PoissonBoltzmannPotential() const | core::scoring::ScoringManager | |
| get_ProQPotential() const | core::scoring::ScoringManager | |
| get_rama_prepro_mainchain_torsion_potential(core::chemical::ResidueTypeCOP restype, bool const use_polycubic_interpolation, bool const prepro_table) const | core::scoring::ScoringManager | |
| get_Ramachandran() const | core::scoring::ScoringManager | |
| get_Ramachandran2B() const | core::scoring::ScoringManager | |
| get_Ramachandran2B_ptr() const | core::scoring::ScoringManager | |
| get_Ramachandran_ptr() const | core::scoring::ScoringManager | |
| get_RamaPrePro() const | core::scoring::ScoringManager | |
| get_RNA_AtomVDW() const | core::scoring::ScoringManager | |
| get_RNA_ChemicalShiftPotential() const | core::scoring::ScoringManager | |
| get_RNA_DMS_LowResolutionPotential() const | core::scoring::ScoringManager | |
| get_RNA_DMS_Potential() const | core::scoring::ScoringManager | |
| get_RNA_LowResolutionPotential(std::string const &database_file) const | core::scoring::ScoringManager | |
| get_rna_suite_potential(bool const &calculate_suiteness_bonus, std::string const &suiteness_bonus) const | core::scoring::ScoringManager | |
| get_RNP_LowResPairDistPotential() const | core::scoring::ScoringManager | |
| get_RNP_LowResPotential() const | core::scoring::ScoringManager | |
| get_RNP_LowResStackData() const | core::scoring::ScoringManager | |
| get_SASAPotential() const | core::scoring::ScoringManager | |
| get_SecondaryStructurePotential() const | core::scoring::ScoringManager | |
| get_SmoothEnvPairPotential() const | core::scoring::ScoringManager | |
| get_SplitUnfoldedTwoBodyPotential(std::string const &label_type, std::string const &value_type, std::string const &score_func_type) const | core::scoring::ScoringManager | |
| get_tna_suite_potential() const | core::scoring::ScoringManager | |
| get_UnfoldedStatePotential(std::string const &type) const | core::scoring::ScoringManager | |
| get_VdWTinkerPotential() const | core::scoring::ScoringManager | |
| get_WaterAdductHBondPotential() const | core::scoring::ScoringManager | |
| has_energy_method(ScoreType t) const | core::scoring::ScoringManager | |
| hxl_tors_potential_ | core::scoring::ScoringManager | mutableprivate |
| loop_close_six_d_potential_ | core::scoring::ScoringManager | mutableprivate |
| make_partially_soft_etable(std::string const &name, etable::EtableOptions etable_options) const | core::scoring::ScoringManager | |
| memb_etable(std::string const &table_id) const | core::scoring::ScoringManager | |
| memb_etables_ | core::scoring::ScoringManager | mutableprivate |
| membrane_fapotential_ | core::scoring::ScoringManager | mutableprivate |
| membrane_potential_ | core::scoring::ScoringManager | mutableprivate |
| method_creator_map_ | core::scoring::ScoringManager | private |
| mhc_csv_db_contents_map_ | core::scoring::ScoringManager | mutableprivate |
| mhc_epitope_setup_helpers_ | core::scoring::ScoringManager | mutableprivate |
| mhc_matrix_contents_map_ | core::scoring::ScoringManager | mutableprivate |
| mhc_sqlite_db_contents_map_ | core::scoring::ScoringManager | mutableprivate |
| mm_bondangle_library_ | core::scoring::ScoringManager | mutableprivate |
| mm_bondlength_library_ | core::scoring::ScoringManager | mutableprivate |
| mm_lj_energy_table_ | core::scoring::ScoringManager | mutableprivate |
| mm_lj_library_ | core::scoring::ScoringManager | mutableprivate |
| mm_torsion_library_ | core::scoring::ScoringManager | mutableprivate |
| mp_base_potential_ | core::scoring::ScoringManager | mutableprivate |
| multipole_elec_potential_ | core::scoring::ScoringManager | mutableprivate |
| netcharge_setup_helpers_ | core::scoring::ScoringManager | mutableprivate |
| nmer_pssm_map_ | core::scoring::ScoringManager | mutableprivate |
| nmer_svm_aa_matrix_map_ | core::scoring::ScoringManager | mutableprivate |
| nmer_svm_list_file_contents_map_ | core::scoring::ScoringManager | mutableprivate |
| nmer_svm_map_ | core::scoring::ScoringManager | mutableprivate |
| nmer_svm_rank_list_file_contents_map_ | core::scoring::ScoringManager | mutableprivate |
| nmer_svm_rank_map_ | core::scoring::ScoringManager | mutableprivate |
| NV_lookup_table_ | core::scoring::ScoringManager | mutableprivate |
| occ_hbond_sol_database_ | core::scoring::ScoringManager | mutableprivate |
| omega_ | core::scoring::ScoringManager | mutableprivate |
| OneDDistPotentials_ | core::scoring::ScoringManager | mutableprivate |
| orbitals_lookup_table_ | core::scoring::ScoringManager | mutableprivate |
| p_aa_ | core::scoring::ScoringManager | mutableprivate |
| p_aa_ss_ | core::scoring::ScoringManager | mutableprivate |
| paa_abego3_ | core::scoring::ScoringManager | mutableprivate |
| pairE_potential_ | core::scoring::ScoringManager | mutableprivate |
| PB_potential_ | core::scoring::ScoringManager | mutableprivate |
| ProQ_potential_ | core::scoring::ScoringManager | mutableprivate |
| pwp_ | core::scoring::ScoringManager | mutableprivate |
| rama2b_ | core::scoring::ScoringManager | mutableprivate |
| rama_ | core::scoring::ScoringManager | mutableprivate |
| rama_pp_ | core::scoring::ScoringManager | mutableprivate |
| rama_prepro_mainchain_potentials_ | core::scoring::ScoringManager | mutableprivate |
| rama_prepro_mainchain_potentials_beforeproline_ | core::scoring::ScoringManager | mutableprivate |
| rna_atom_vdw_ | core::scoring::ScoringManager | mutableprivate |
| rna_chemical_shift_potential_ | core::scoring::ScoringManager | mutableprivate |
| rna_dms_low_resolution_potential_ | core::scoring::ScoringManager | mutableprivate |
| rna_dms_potential_ | core::scoring::ScoringManager | mutableprivate |
| rna_low_resolution_potential_ | core::scoring::ScoringManager | mutableprivate |
| rna_suite_potential_ | core::scoring::ScoringManager | mutableprivate |
| rnp_low_res_pair_dist_potential_ | core::scoring::ScoringManager | mutableprivate |
| rnp_low_res_potential_ | core::scoring::ScoringManager | mutableprivate |
| rnp_low_res_stack_data_ | core::scoring::ScoringManager | mutableprivate |
| sasa_potential_ | core::scoring::ScoringManager | mutableprivate |
| ScoringManager() | core::scoring::ScoringManager | private |
| secondary_structure_potential_ | core::scoring::ScoringManager | mutableprivate |
| smooth_env_pair_potential_ | core::scoring::ScoringManager | mutableprivate |
| sutbp_ | core::scoring::ScoringManager | mutableprivate |
| tna_suite_potential_ | core::scoring::ScoringManager | mutableprivate |
| unf_state_ | core::scoring::ScoringManager | mutableprivate |
| utility::SingletonBase< ScoringManager > class | core::scoring::ScoringManager | friend |
| vdw_tinker_potential_ | core::scoring::ScoringManager | mutableprivate |
| water_adduct_hbond_potential_ | core::scoring::ScoringManager | mutableprivate |
| ~ScoringManager() | core::scoring::ScoringManager | private |
1.8.7