protocols::toolbox::GreedyKCenter Class Reference

Greedy K-Center Clustering Algorithm. More...

#include <KCluster.hh>

Inheritance diagram for protocols::toolbox::GreedyKCenter:

Public Member Functions
	GreedyKCenter ()
bool	whoami () override
core::Real	get_threshold () override
void	init (KClusterElementOP, core::Size first=0) override
core::Real	assign (KClusterElementOP, KClusterData &) override
void	update (KClusterElementOP, KClusterData &) override
void	set_threshold (core::Real) override
Public Member Functions inherited from protocols::toolbox::KCluster
	KCluster ()
	~KCluster () override
void	cluster (KClusterElementOP, KClusterData &, core::Size first=0)
void	set_ncluster (core::Size nc)

Protected Attributes
core::Real	radius_
Protected Attributes inherited from protocols::toolbox::KCluster
core::Size	n_cluster_

Additional Inherited Members
Public Types inherited from protocols::toolbox::KCluster
typedef ObjexxFCL::FArray2_double	FA2d
typedef ObjexxFCL::FArray2P_double	FA2Pd
typedef ObjexxFCL::FArray2D_double	FA2Dd

Detailed Description

Greedy K-Center Clustering Algorithm.

Note

"A Fast Geometric Clustering Method on Conformation Space of Biomolecules" Jian Sun, Yuan Yao, Xuhui Huang, Vijay Pande, Gunnar Carlsson, Leonidas J. Guibas

Constructor & Destructor Documentation

protocols::toolbox::GreedyKCenter::GreedyKCenter

(

)

References radius_.

Member Function Documentation

Real protocols::toolbox::GreedyKCenter::assign ( KClusterElementOP  c, KClusterData &  d  )

overridevirtual

Implements protocols::toolbox::KCluster.

References protocols::toolbox::KClusterData::dist_square().

Real protocols::toolbox::GreedyKCenter::get_threshold ( )

overridevirtual

Implements protocols::toolbox::KCluster.

References radius_.

void protocols::toolbox::GreedyKCenter::init ( KClusterElementOP  c, core::Size  first = 0  )

overridevirtual

Implements protocols::toolbox::KCluster.

References core::conformation::membrane::center, core::scoring::rg, and protocols::TR().

void protocols::toolbox::GreedyKCenter::set_threshold ( core::Real  r )

overridevirtual

Implements protocols::toolbox::KCluster.

References radius_.

void protocols::toolbox::GreedyKCenter::update ( KClusterElementOP  c, KClusterData &    )

overridevirtual

Implements protocols::toolbox::KCluster.

References protocols::toolbox::KCluster::n_cluster_, and protocols::TR().

bool protocols::toolbox::GreedyKCenter::whoami ( )

overridevirtual

Implements protocols::toolbox::KCluster.

References protocols::TR().

Member Data Documentation

core::Real protocols::toolbox::GreedyKCenter::radius_

protected

Referenced by get_threshold(), GreedyKCenter(), and set_threshold().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/KCluster.hh
• src/protocols/toolbox/KCluster.cc