core::scoring::bin_transitions Namespace Reference

Classes
class	BinTransitionCalculator
class	BinTransitionData

Typedefs
typedef utility::pointer::shared_ptr < BinTransitionCalculator >	BinTransitionCalculatorOP
typedef utility::pointer::shared_ptr < BinTransitionCalculator const >	BinTransitionCalculatorCOP
typedef utility::vector1 < BinTransitionCalculatorOP >	BinTransitionCalculatorOPs
typedef utility::vector1 < BinTransitionCalculatorCOP >	BinTransitionCalculatorCOPs
typedef utility::pointer::shared_ptr < BinTransitionData >	BinTransitionDataOP
typedef utility::pointer::shared_ptr < BinTransitionData const >	BinTransitionDataCOP
typedef utility::vector1 < BinTransitionDataOP >	BinTransitionDataOPs
typedef utility::vector1 < BinTransitionDataCOP >	BinTransitionDataCOPs

Enumerations
enum	BT_PROPERTIES {   BT_PROTEIN =1, BT_L_AA, BT_D_AA, BT_ALPHA_AA,   BT_BETA_AA, BT_POLAR, BT_METALBINDING, BT_CHARGED,   BT_AROMATIC, BT_DISULFIDE_BONDED, BT_SIDECHAIN_THIOL, BT_CYCLIC,   BT_UNKNOWN_PROPERTY, BT_END_OF_LIST }
	Enum for the properties that can be required or prohibited at the i or i+1 position. More...
enum	BTSB_SUBBIN_TYPE {   BTSB_NONE =1, BTSB_L_AA, BTSB_D_AA, BTSB_L_PRO,   BTSB_D_PRO, BTSB_GLY, BTSB_UNKNOWN, BTSB_END_OF_LIST }
	Enum for the way in which bins will be divided into subbins. More...

Functions
static basic::Tracer	TR ("core.scoring.bin_transitions.BinTransitionCalculator")
static basic::Tracer	TR ("core.scoring.bin_transitions.BinTransitionData")

Typedef Documentation

typedef utility::pointer::shared_ptr< BinTransitionCalculator const > core::scoring::bin_transitions::BinTransitionCalculatorCOP

typedef utility::vector1<BinTransitionCalculatorCOP> core::scoring::bin_transitions::BinTransitionCalculatorCOPs

typedef utility::pointer::shared_ptr< BinTransitionCalculator > core::scoring::bin_transitions::BinTransitionCalculatorOP

typedef utility::vector1<BinTransitionCalculatorOP> core::scoring::bin_transitions::BinTransitionCalculatorOPs

typedef utility::pointer::shared_ptr< BinTransitionData const > core::scoring::bin_transitions::BinTransitionDataCOP

typedef utility::vector1<BinTransitionDataCOP> core::scoring::bin_transitions::BinTransitionDataCOPs

typedef utility::pointer::shared_ptr< BinTransitionData > core::scoring::bin_transitions::BinTransitionDataOP

typedef utility::vector1<BinTransitionDataOP> core::scoring::bin_transitions::BinTransitionDataOPs

Enumeration Type Documentation

enum core::scoring::bin_transitions::BT_PROPERTIES

Enum for the properties that can be required or prohibited at the i or i+1 position.

These reflect properties that residues can have. Whenever a property is added, add it (1) here, (2) to the get_property_effect_name function, and (3) to the has_property function.

Enumerator
BT_PROTEIN
BT_L_AA
BT_D_AA
BT_ALPHA_AA
BT_BETA_AA
BT_POLAR
BT_METALBINDING
BT_CHARGED
BT_AROMATIC
BT_DISULFIDE_BONDED
BT_SIDECHAIN_THIOL
BT_CYCLIC
BT_UNKNOWN_PROPERTY
BT_END_OF_LIST

enum core::scoring::bin_transitions::BTSB_SUBBIN_TYPE

Enum for the way in which bins will be divided into subbins.

Default is BTSB_NONE, which means that the bin has no subbins. As subbin types are added, add them (1) here, and (2) to the get_subbin_type_name function, and (3) to the setup_subbin_type function, then add a function called by the setup_subbin_type function.

Enumerator
BTSB_NONE
BTSB_L_AA
BTSB_D_AA
BTSB_L_PRO
BTSB_D_PRO
BTSB_GLY
BTSB_UNKNOWN
BTSB_END_OF_LIST

Function Documentation

static basic::Tracer core::scoring::bin_transitions::TR ( "core.scoring.bin_transitions.BinTransitionData"  )

static

static basic::Tracer core::scoring::bin_transitions::TR ( "core.scoring.bin_transitions.BinTransitionCalculator"  )

static

Referenced by core::scoring::bin_transitions::BinTransitionData::set_n_bins(), and core::scoring::bin_transitions::BinTransitionData::which_bin_i().