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protocols::features::InterfaceFeatures Member List

This is the complete list of members for protocols::features::InterfaceFeatures, including all inherited members.

chains_exist_in_pose(core::pose::Pose const &pose, std::string const &interface) const protocols::features::InterfaceFeaturesprotected
check_relevant_residues(utility::vector1< bool > const &relevant_residues, core::Size res1) const protocols::features::FeaturesReporter
check_relevant_residues(utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const protocols::features::FeaturesReporter
check_relevant_residues(utility::vector1< bool > const &relevant_residues, utility::vector1< core::Size > const &residues) const protocols::features::FeaturesReporter
check_relevant_residues_range(utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const protocols::features::FeaturesReporter
class_name()protocols::features::InterfaceFeaturesstatic
compute_packstat_protocols::features::InterfaceFeaturesprotected
delete_record(StructureID, utility::sql_database::sessionOP)protocols::features::FeaturesReporterinlinevirtual
delete_records_from_table(std::string const &table_name, StructureID struct_id, utility::sql_database::sessionOP db_session)protocols::features::FeaturesReporterprotected
dSASA_cutoff_protocols::features::InterfaceFeaturesprotected
features_reporter_dependencies() const overrideprotocols::features::InterfaceFeaturesvirtual
FeaturesReporter()protocols::features::FeaturesReporterinline
find_tag(core::pose::Pose const &pose) const protocols::features::FeaturesReporterprotected
get_all_pose_chains(core::pose::Pose const &pose)protocols::features::InterfaceFeaturesprivate
get_all_string_combos(std::string &interface, std::string current, utility::vector1< std::string > &chains) const protocols::features::InterfaceFeaturesprivate
get_length_combos(std::string current, utility::vector1< std::string > &sizes) const protocols::features::InterfaceFeaturesprivate
get_relevant_residues_mode() const protocols::features::FeaturesReporter
interface_analyzer_protocols::features::InterfaceFeaturesprotected
interface_exists(utility::vector1< std::string > &interfaces, std::string &dock_chains) const protocols::features::InterfaceFeaturesprotected
InterfaceFeatures()protocols::features::InterfaceFeatures
InterfaceFeatures(core::scoring::ScoreFunctionCOP scorefxn)protocols::features::InterfaceFeatures
interfaces_protocols::features::InterfaceFeaturesprotected
load_into_pose(utility::sql_database::sessionOP, StructureID, core::pose::Pose &)protocols::features::FeaturesReporterinlinevirtual
make_interface_combos(core::pose::Pose const &pose, utility::vector1< std::string > &interfaces)protocols::features::InterfaceFeatures
pack_separated_protocols::features::InterfaceFeaturesprotected
pack_together_protocols::features::InterfaceFeaturesprotected
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) overrideprotocols::features::InterfaceFeaturesvirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::features::InterfaceFeaturesstatic
relevant_residues_mode_protocols::features::FeaturesReporterprotected
report_all_interface_features(core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, StructureID struct_id, utility::sql_database::sessionOP db_session, std::string const &interface, std::string const &db_interface)protocols::features::InterfaceFeaturesvirtual
report_features(core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, StructureID struct_id, utility::sql_database::sessionOP db_session) overrideprotocols::features::InterfaceFeaturesvirtual
protocols::features::FeaturesReporter::report_features(core::pose::Pose const &, StructureID, utility::sql_database::sessionOP)protocols::features::FeaturesReporter
report_interface_features(core::pose::Pose const &pose, StructureID struct_id, utility::sql_database::sessionOP db_session, std::string const &chains_side1, std::string const &chains_side2) const protocols::features::InterfaceFeaturesvirtual
report_interface_residue_features(core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, StructureID struct_id, utility::sql_database::sessionOP db_session, std::string const &chains_side1, std::string const &chains_side2) const protocols::features::InterfaceFeaturesvirtual
report_interface_side_features(core::pose::Pose const &pose, StructureID struct_id, utility::sql_database::sessionOP db_session, std::string const &chains_side1, std::string const &chains_side2, protocols::analysis::InterfaceRegion region, std::string const &region_string) const protocols::features::InterfaceFeaturesvirtual
schema() const protocols::features::FeaturesReporterinlinevirtual
scorefxn_protocols::features::InterfaceFeaturesprotected
set_compute_packstat(bool const compute_packstat)protocols::features::InterfaceFeatures
set_defaults()protocols::features::InterfaceFeatures
set_dSASA_cutoff(core::Real dSASA_cutoff)protocols::features::InterfaceFeatures
set_interface_chains(utility::vector1< std::string > const &interfaces)protocols::features::InterfaceFeaturesvirtual
set_pack_separated(bool const pack_separated)protocols::features::InterfaceFeatures
set_pack_together(bool const pack_together)protocols::features::InterfaceFeatures
set_relevant_residues_mode(RelevantResiduesMode::T setting)protocols::features::FeaturesReporter
set_scorefxn(core::scoring::ScoreFunctionOP scorefxn)protocols::features::InterfaceFeatures
type_name() const overrideprotocols::features::InterfaceFeaturesvirtual
write_interface_residue_data_row_to_db(StructureID struct_id, utility::sql_database::sessionOP db_session, std::string const &chains_side1, std::string const &chains_side2, std::string const &side, core::Size const resnum, protocols::analysis::PerResidueInterfaceData const &interface_data) const protocols::features::InterfaceFeaturesprivate
write_interface_residues_schema_to_db(utility::sql_database::sessionOP db_session) const protocols::features::InterfaceFeaturesvirtual
write_interface_schema_to_db(utility::sql_database::sessionOP db_session) const protocols::features::InterfaceFeaturesvirtual
write_interface_side_schema_to_db(utility::sql_database::sessionOP db_session) const protocols::features::InterfaceFeaturesvirtual
write_schema_to_db(utility::sql_database::sessionOP db_session) const overrideprotocols::features::InterfaceFeaturesvirtual
~FeaturesReporter() overrideprotocols::features::FeaturesReporter
~InterfaceFeatures() overrideprotocols::features::InterfaceFeatures
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