This is the complete list of members for protocols::stepwise::monte_carlo::submotif::SubMotifLibrary, including all inherited members.

create_new_submotif(SequenceMapping const &sequence_mapping, PoseTag const &submotif_tag, core::pose::Pose const &pose, bool const &seed=false) const	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary
exclude_submotif_list_	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
get_matches(utility::vector1< SequenceMapping > &all_matches, SequenceMapping const &matching_residues, std::string const &submotif_sequence, utility::vector1< core::Size > const &submotif_cutpoints, std::string const &pose_sequence, utility::vector1< core::Size > const &pose_cutpoints, utility::vector1< core::Size > const &pose_domain_map) const	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
get_matches_for_one_submotif_sequence_set(SubMotifSequenceSet const &submotif_sequence_set, core::pose::Pose const &pose, bool const use_full_model_info=true) const	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
get_moves_for_one_submotif(core::pose::PoseCOP submotif_pose, core::pose::Pose const &pose) const	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
get_submotif_moves(core::pose::Pose const &pose) const	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary
get_submotif_sequence_set(core::pose::Pose const &pose, bool sort_sequences=true) const	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
include_submotifs_from_jump_library_	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
initialize()	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
initialize_from_directory(std::string const &dir_name)	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
initialize_from_jump_library()	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
output_tags() const	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
rsd_set_	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
save_pose_as_submotif(core::pose::PoseOP pose, std::string const &tag)	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
submotif_mappings_by_sequence_set_	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
submotif_poses_by_tag_	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
submotif_sequence_sets_	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
SubMotifLibrary(core::chemical::ResidueTypeSetCOP rsd_set, bool const include_submotifs_from_jump_library=false, bool const use_first_jump_for_submotif=false, utility::vector1< std::string > const &exclude_submotif_list=utility::vector1< std::string >())	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary
use_first_jump_for_submotif_	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary	private
~SubMotifLibrary() override	protocols::stepwise::monte_carlo::submotif::SubMotifLibrary