protocols::simple_ddg::ddG Member List

This is the complete list of members for protocols::simple_ddg::ddG, including all inherited members.

apply(Pose &pose) override	protocols::simple_ddg::ddG	virtual
bound_energies_	protocols::simple_ddg::ddG	private
bound_HOH_	protocols::simple_ddg::ddG	private
bound_HOH_V_	protocols::simple_ddg::ddG	private
bound_per_residue_energies_	protocols::simple_ddg::ddG	private
bound_rmsd_	protocols::simple_ddg::ddG	private
bound_rmsd_super_	protocols::simple_ddg::ddG	private
calculate(Pose const &pose_in)	protocols::simple_ddg::ddG	virtual
chain_ids() const	protocols::simple_ddg::ddG	inline
chain_ids_	protocols::simple_ddg::ddG	private
chain_names_	protocols::simple_ddg::ddG	private
clean_pose(Pose &pose_copy)	protocols::simple_ddg::ddG
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::simple_ddg::ddG	virtual
compute_rmsd(bool const crms)	protocols::simple_ddg::ddG	inline
compute_rmsd() const	protocols::simple_ddg::ddG	inline
compute_rmsd_	protocols::simple_ddg::ddG	private
compute_rmsd_with_super(Pose const &pose, Real &input_rmsd_super, Real &input_rmsd)	protocols::simple_ddg::ddG
create()	protocols::moves::Mover	virtual
ddG()	protocols::simple_ddg::ddG
ddG(core::scoring::ScoreFunctionCOP scorefxn_in, core::Size const jump=1)	protocols::simple_ddg::ddG
ddG(core::scoring::ScoreFunctionCOP scorefxn_in, core::Size const jump, utility::vector1< core::Size > const &chain_ids)	protocols::simple_ddg::ddG
define_ddG_schema()	protocols::simple_ddg::ddG	static
do_minimize(Pose &pose) const	protocols::simple_ddg::ddG	private
dump_pdbs(bool dp)	protocols::simple_ddg::ddG	inline
dump_pdbs() const	protocols::simple_ddg::ddG	inline
dump_pdbs_	protocols::simple_ddg::ddG	private
duplicate_waters_across_jump(Pose &pose, core::Size jumpnum) const	protocols::simple_ddg::ddG	private
fill_energy_vector(Pose const &pose, std::map< ScoreType, Real > &energy_map)	protocols::simple_ddg::ddG	private
fill_per_residue_energy_vector(Pose const &pose, std::map< core::Size, Real > &energy_map)	protocols::simple_ddg::ddG	private
filter() const	protocols::simple_ddg::ddG
filter(protocols::filters::FilterOP f)	protocols::simple_ddg::ddG
filter_	protocols::simple_ddg::ddG	private
fresh_instance() const override	protocols::simple_ddg::ddG	inlinevirtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_movable_jumps(core::pose::Pose const &pose) const	protocols::simple_ddg::ddG
get_name() const override	protocols::simple_ddg::ddG	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
min_water_jump_	protocols::simple_ddg::ddG	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::simple_ddg::ddG	static
name()	protocols::moves::Mover	inlinestatic
native_	protocols::simple_ddg::ddG	private
parse_my_tag(utility::tag::TagCOP, basic::datacache::DataMap &) override	protocols::simple_ddg::ddG	virtual
pb_cached_data_	protocols::simple_ddg::ddG	private
pb_enabled_	protocols::simple_ddg::ddG	private
per_residue_ddg_	protocols::simple_ddg::ddG	private
Pose typedef	protocols::simple_ddg::ddG
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::simple_ddg::ddG	static
rb_jump() const	protocols::simple_ddg::ddG	inline
rb_jump(core::Size j)	protocols::simple_ddg::ddG	inline
rb_jump_	protocols::simple_ddg::ddG	private
Real typedef	protocols::simple_ddg::ddG
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
relax_bound(bool rlb)	protocols::simple_ddg::ddG	inline
relax_bound() const	protocols::simple_ddg::ddG	inline
relax_bound_	protocols::simple_ddg::ddG	private
relax_mover() const	protocols::simple_ddg::ddG	inline
relax_mover(protocols::moves::MoverOP m)	protocols::simple_ddg::ddG	inline
relax_mover_	protocols::simple_ddg::ddG	private
relax_unbound(bool const rlu)	protocols::simple_ddg::ddG	inline
relax_unbound() const	protocols::simple_ddg::ddG	inline
relax_unbound_	protocols::simple_ddg::ddG	private
repack_bound(bool rpb)	protocols::simple_ddg::ddG	inline
repack_bound() const	protocols::simple_ddg::ddG	inline
repack_bound_	protocols::simple_ddg::ddG	private
repack_unbound(bool rpu)	protocols::simple_ddg::ddG	inline
repack_unbound() const	protocols::simple_ddg::ddG	inline
repack_unbound_	protocols::simple_ddg::ddG	private
repeats() const	protocols::simple_ddg::ddG	inline
repeats(core::Size repeats)	protocols::simple_ddg::ddG	inline
repeats_	protocols::simple_ddg::ddG	private
report_ddG(std::ostream &out) const	protocols::simple_ddg::ddG	virtual
reset_status()	protocols::moves::Mover
scorefxn(core::scoring::ScoreFunctionCOP scorefxn_in)	protocols::simple_ddg::ddG	virtual
scorefxn_	protocols::simple_ddg::ddG	private
ScoreType typedef	protocols::simple_ddg::ddG
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
setup_solvated_task(Pose const &pose, bool bound)	protocols::simple_ddg::ddG	private
setup_task(Pose const &pose)	protocols::simple_ddg::ddG	private
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
solvate_	protocols::simple_ddg::ddG	private
solvate_rbmin_	protocols::simple_ddg::ddG	private
solvate_unbound_	protocols::simple_ddg::ddG	private
Strings typedef	protocols::moves::Mover
sum_bound() const	protocols::simple_ddg::ddG	virtual
sum_ddG() const	protocols::simple_ddg::ddG	virtual
sum_unbound() const	protocols::simple_ddg::ddG	virtual
TagCOP typedef	protocols::moves::Mover
task_	protocols::simple_ddg::ddG	private
task_factory(core::pack::task::TaskFactoryOP task_factory)	protocols::simple_ddg::ddG	inline
task_factory() const	protocols::simple_ddg::ddG	inline
task_factory_	protocols::simple_ddg::ddG	private
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
translate_by() const	protocols::simple_ddg::ddG	inline
translate_by(core::Real translate_by)	protocols::simple_ddg::ddG	inline
translate_by_	protocols::simple_ddg::ddG	private
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
unbind(Pose &pose) const	protocols::simple_ddg::ddG	private
unbound_energies_	protocols::simple_ddg::ddG	private
unbound_HOH_	protocols::simple_ddg::ddG	private
unbound_HOH_V_	protocols::simple_ddg::ddG	private
unbound_per_residue_energies_	protocols::simple_ddg::ddG	private
use_custom_task(bool uct)	protocols::simple_ddg::ddG	inline
use_custom_task() const	protocols::simple_ddg::ddG	inline
use_custom_task_	protocols::simple_ddg::ddG	private
~ddG() override	protocols::simple_ddg::ddG