UBQ_GTPaseMover.cc File Reference

A mover typically used for binding ubiquitin to a substrate protein. More...

#include <protocols/chemically_conjugated_docking/UBQ_GTPaseMover.hh>
#include <protocols/chemically_conjugated_docking/UBQ_GTPaseMoverCreator.hh>
#include <protocols/chemically_conjugated_docking/Gp_quantification_metrics.hh>
#include <protocols/chemically_conjugated_docking/Gp_extra_bodies.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/PDBPoseMap.hh>
#include <core/import_pose/import_pose.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <protocols/task_operations/RestrictByCalculatorsOperation.hh>
#include <core/pack/palette/NoDesignPackerPalette.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/util.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueType.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/select/residue_selector/ResidueIndexSelector.hh>
#include <core/select/residue_selector/util.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <protocols/jd2/FileJobOutputter.hh>
#include <protocols/jd2/wwPDBJobOutputter.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/minimization_packing/RotamerTrialsMover.hh>
#include <protocols/minimization_packing/TaskAwareMinMover.hh>
#include <protocols/moves/OutputMovers.hh>
#include <protocols/simple_moves/TorsionDOFMover.hh>
#include <protocols/moves/JumpOutMover.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicMover.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicWrapper.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/simple_moves/sidechain_moves/SidechainMover.hh>
#include <basic/MetricValue.hh>
#include <core/pose/metrics/CalculatorFactory.hh>
#include <core/pose/metrics/simple_calculators/InterfaceSasaDefinitionCalculator.hh>
#include <core/pose/metrics/simple_calculators/InterfaceNeighborDefinitionCalculator.hh>
#include <protocols/pose_metric_calculators/NeighborhoodByDistanceCalculator.hh>
#include <protocols/pose_metric_calculators/InterGroupNeighborsCalculator.hh>
#include <protocols/analysis/InterfaceAnalyzerMover.hh>
#include <numeric/conversions.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/DataMap.hh>
#include <utility/tag/Tag.hh>
#include <core/select/util.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>
#include <utility/vector1.hh>
#include <utility/exit.hh>
#include <utility/pointer/owning_ptr.hh>
#include <basic/prof.hh>
#include <string>
#include <basic/options/keys/chemically_conjugated_docking.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/AnchoredDesign.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <utility/vector0.hh>
#include <utility/excn/Exceptions.hh>
#include <core/kinematics/AtomTree.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::chemically_conjugated_docking

Functions
static basic::Tracer	TR ("protocols.chemically_conjugated_docking.UBQ_GTPaseMover")
std::ostream &	protocols::chemically_conjugated_docking::operator<< (std::ostream &os, UBQ_GTPaseMover const &mover)
	private methods /// More...

Detailed Description

A mover typically used for binding ubiquitin to a substrate protein.

Author

Steven Lewis and Hope Anderson

Function Documentation

static basic::Tracer TR ( "protocols.chemically_conjugated_docking.UBQ_GTPaseMover"  )

static