protocols::jd3::chunk_library Namespace Reference

Classes
class	ChunkLibraryInnerLarvalJob
class	ChunkLibraryJobQueen
	The ChunkLibraryJobQueen is meant to handle the most common form of Rosetta jobs where a protocol is applied to a single input structure to generate a single output structure. Most JobQueens in Rosetta will to derive from this JobQueen. To make the process of deriving new JobQueens easy, this class's API has been carefully designed to be easy to work with and the class itself has been designed to do as much heavy lifting as possible and to leave only the responsibilities that the ChunkLibraryJobQueen could not perform to the derived classes. More...
class	ChunkLibraryJobResult
class	ChunkLibraryPreliminaryLarvalJob
class	MoverAndChunkLibraryJob

Typedefs
typedef utility::pointer::shared_ptr < ChunkLibraryInnerLarvalJob >	ChunkLibraryInnerLarvalJobOP
typedef utility::pointer::shared_ptr < ChunkLibraryInnerLarvalJob const >	ChunkLibraryInnerLarvalJobCOP
typedef utility::vector1 < ChunkLibraryInnerLarvalJobOP >	ChunkLibraryInnerLarvalJobs
typedef utility::pointer::shared_ptr < ChunkLibraryJobQueen >	ChunkLibraryJobQueenOP
typedef utility::pointer::shared_ptr < ChunkLibraryJobQueen const >	ChunkLibraryJobQueenCOP
typedef utility::pointer::shared_ptr < PreliminaryLarvalJob >	PreliminaryLarvalJobOP
typedef utility::pointer::shared_ptr < PreliminaryLarvalJob const >	PreliminaryLarvalJobCOP
typedef std::list < ChunkLibraryPreliminaryLarvalJob >	ChunkLibraryPreliminaryLarvalJobs
typedef utility::pointer::shared_ptr < MoverAndChunkLibraryJob >	MoverAndChunkLibraryJobOP
typedef utility::pointer::shared_ptr < MoverAndChunkLibraryJob const >	MoverAndChunkLibraryJobCOP
typedef utility::pointer::shared_ptr < ChunkLibraryJobResult >	ChunkLibraryJobResultOP
typedef utility::pointer::shared_ptr < ChunkLibraryJobResult const >	ChunkLibraryJobResultCOP

Functions
std::ostream &	operator<< (std::ostream &out, const ChunkLibraryInnerLarvalJob &inner_job)
utility::excn::Exception	bad_inner_job_exception ()
utility::options::OptionTypes	option_type_from_key (utility::options::OptionKey const &key)
utility::tag::XMLSchemaType	value_attribute_type_for_option (utility::options::OptionTypes const &key)

Typedef Documentation

typedef utility::pointer::shared_ptr< ChunkLibraryInnerLarvalJob const > protocols::jd3::chunk_library::ChunkLibraryInnerLarvalJobCOP

typedef utility::pointer::shared_ptr< ChunkLibraryInnerLarvalJob > protocols::jd3::chunk_library::ChunkLibraryInnerLarvalJobOP

typedef utility::vector1< ChunkLibraryInnerLarvalJobOP > protocols::jd3::chunk_library::ChunkLibraryInnerLarvalJobs

typedef utility::pointer::shared_ptr< ChunkLibraryJobQueen const > protocols::jd3::chunk_library::ChunkLibraryJobQueenCOP

typedef utility::pointer::shared_ptr< ChunkLibraryJobQueen > protocols::jd3::chunk_library::ChunkLibraryJobQueenOP

typedef utility::pointer::shared_ptr< ChunkLibraryJobResult const > protocols::jd3::chunk_library::ChunkLibraryJobResultCOP

typedef utility::pointer::shared_ptr< ChunkLibraryJobResult > protocols::jd3::chunk_library::ChunkLibraryJobResultOP

typedef std::list< ChunkLibraryPreliminaryLarvalJob > protocols::jd3::chunk_library::ChunkLibraryPreliminaryLarvalJobs

typedef utility::pointer::shared_ptr< MoverAndChunkLibraryJob const > protocols::jd3::chunk_library::MoverAndChunkLibraryJobCOP

typedef utility::pointer::shared_ptr< MoverAndChunkLibraryJob > protocols::jd3::chunk_library::MoverAndChunkLibraryJobOP

typedef utility::pointer::shared_ptr< PreliminaryLarvalJob const > protocols::jd3::chunk_library::PreliminaryLarvalJobCOP

typedef utility::pointer::shared_ptr< PreliminaryLarvalJob > protocols::jd3::chunk_library::PreliminaryLarvalJobOP

Function Documentation

utility::excn::Exception protocols::jd3::chunk_library::bad_inner_job_exception

(

)

Referenced by protocols::jd3::chunk_library::ChunkLibraryJobQueen::create_and_store_output_specification_for_job_result(), protocols::jd3::chunk_library::ChunkLibraryJobQueen::create_output_specification_for_job_result(), protocols::jd3::chunk_library::ChunkLibraryJobQueen::has_job_previously_been_output(), protocols::jd3::chunk_library::ChunkLibraryJobQueen::mature_larval_job(), protocols::jd3::chunk_library::ChunkLibraryJobQueen::note_job_completed(), and protocols::jd3::chunk_library::ChunkLibraryJobQueen::pose_for_job().

std::ostream& protocols::jd3::chunk_library::operator<<	(	std::ostream &	out,
		const ChunkLibraryInnerLarvalJob &	inner_job
	)

References core::conformation::membrane::out, and protocols::jd3::chunk_library::ChunkLibraryInnerLarvalJob::show().

utility::options::OptionTypes protocols::jd3::chunk_library::option_type_from_key

(

utility::options::OptionKey const &

key

)

Referenced by protocols::jd3::chunk_library::ChunkLibraryJobQueen::job_definition_xsd(), and protocols::jd3::chunk_library::ChunkLibraryJobQueen::options_from_tag().

utility::tag::XMLSchemaType protocols::jd3::chunk_library::value_attribute_type_for_option

(

utility::options::OptionTypes const &

key

)

Referenced by protocols::jd3::chunk_library::ChunkLibraryJobQueen::job_definition_xsd().