protocols::cartesian::MolecularDynamics Member List

This is the complete list of members for protocols::cartesian::MolecularDynamics, including all inherited members.

anglelist	protocols::cartesian::MolecularDynamics	private
applyForces_BeeMan(float &kin, float &temp)	protocols::cartesian::MolecularDynamics	private
applyForces_ConjugateGradient(int Step, float &current_energy, float &m_OldEnergy)	protocols::cartesian::MolecularDynamics	private
applyForces_LangevinIntegration(core::Real T, float &kin, float &temp)	protocols::cartesian::MolecularDynamics	private
bondlist	protocols::cartesian::MolecularDynamics	private
calcKineticEnergy(float &ekin, float &Temp)	protocols::cartesian::MolecularDynamics	private
cartom	protocols::cartesian::MolecularDynamics	private
createAngleList()	protocols::cartesian::MolecularDynamics	private
createBondList()	protocols::cartesian::MolecularDynamics	private
createCartesianArray()	protocols::cartesian::MolecularDynamics	private
createCartesianDerivatives(core::pose::Pose &pose, core::scoring::ScoreFunction const &scorefxn)	protocols::cartesian::MolecularDynamics	private
createCartesianDerivatives(core::scoring::ScoreFunction const &scorefxn)	protocols::cartesian::MolecularDynamics	private
createDihedral(const core::conformation::Residue &rsd, std::string const &name1, std::string const &name2, std::string const &name3, std::string const &name4)	protocols::cartesian::MolecularDynamics	private
createDihedral(const core::conformation::Residue &rsd1, const core::conformation::Residue &rsd2, const core::conformation::Residue &rsd3, const core::conformation::Residue &rsd4, std::string const &name1, std::string const &name2, std::string const &name3, std::string const &name4)	protocols::cartesian::MolecularDynamics	private
createDihedralList()	protocols::cartesian::MolecularDynamics	private
dihedrallist	protocols::cartesian::MolecularDynamics	private
doAngleDerivatives(float &totalepot)	protocols::cartesian::MolecularDynamics	private
doBondDerivatives(float &totalepot)	protocols::cartesian::MolecularDynamics	private
doDihedralDerivatives(float &totalepot)	protocols::cartesian::MolecularDynamics	private
domain_map	protocols::cartesian::MolecularDynamics	private
doMD(core::scoring::ScoreFunction const &scorefxn, int Steps, float startTemp, float endTemp)	protocols::cartesian::MolecularDynamics
doMinimising(core::scoring::ScoreFunction const &scorefxn)	protocols::cartesian::MolecularDynamics
findCartomAtom(const core::id::AtomID &id1)	protocols::cartesian::MolecularDynamics	private
getCartesianDerivatives(core::scoring::ScoreFunction const &scorefxn)	protocols::cartesian::MolecularDynamics	private
min_map	protocols::cartesian::MolecularDynamics	private
mm	protocols::cartesian::MolecularDynamics	private
MolecularDynamics(core::pose::PoseOP &inputpose, core::scoring::ScoreFunction const &scorefxn)	protocols::cartesian::MolecularDynamics
pose	protocols::cartesian::MolecularDynamics	private
setCartesianPositionsFromPose()	protocols::cartesian::MolecularDynamics	private
setDihedralDerivatives()	protocols::cartesian::MolecularDynamics	private
setInitialSpeeds(core::Real tgtTemp)	protocols::cartesian::MolecularDynamics	private
setPosePositionsFromCartesian()	protocols::cartesian::MolecularDynamics	private
testCartesianDerivatives(core::scoring::ScoreFunction const &scorefxn)	protocols::cartesian::MolecularDynamics
zeroForces()	protocols::cartesian::MolecularDynamics	private