| active_site_grid() const | protocols::match::downstream::DownstreamAlgorithm | inlineprotected |
| active_site_grid_set() const | protocols::match::downstream::DownstreamAlgorithm | inlineprotected |
| add_external_geom_sampler(utility::vector1< toolbox::match_enzdes_util::ExternalGeomSampler > const &sampler, core::Size const exgeom_id, std::string const &atom1, std::string const &atom2, std::string const &atom3, DownstreamBuilderCOP downstream_builder) | protocols::match::downstream::ClassicMatchAlgorithm | |
| are_colliding(core::conformation::Residue const &us_res, core::conformation::Residue const &ds_res, utility::vector1< core::id::AtomID > const &ds_atoms, utility::vector1< core::Size > const &catalytic_atoms) const | protocols::match::downstream::DownstreamAlgorithm | |
| bbgrid() const | protocols::match::downstream::DownstreamAlgorithm | inlineprotected |
| build(core::Size const scaffold_build_point_id, core::Size const upstream_conf_id, core::conformation::Residue const &upstream_residue) const override | protocols::match::downstream::ClassicMatchAlgorithm | virtual |
| build_and_discard_first_round_hits_at_all_positions(Matcher &matcher) | protocols::match::downstream::ClassicMatchAlgorithm | |
| build_from_three_coords(core::Size const which_external_sampler, core::Size const scaffold_build_point_id, core::Size const upstream_conf_id, core::conformation::Residue const &upstream_residue) const | protocols::match::downstream::ClassicMatchAlgorithm | |
| build_hits_at_all_positions(Matcher &matcher) override | protocols::match::downstream::ClassicMatchAlgorithm | virtual |
| build_round1_hits_twice_ | protocols::match::downstream::ClassicMatchAlgorithm | private |
| ClassicMatchAlgorithm(core::Size geom_cst_id) | protocols::match::downstream::ClassicMatchAlgorithm | |
| clear_external_geom_samplers() | protocols::match::downstream::ClassicMatchAlgorithm | |
| clone() const override | protocols::match::downstream::ClassicMatchAlgorithm | virtual |
| completed_first_round1_hit_building_ | protocols::match::downstream::ClassicMatchAlgorithm | private |
| default_build_hits_at_all_positions(Matcher const &matcher) const | protocols::match::downstream::DownstreamAlgorithm | protected |
| DownstreamAlgorithm(core::Size geom_cst_id) | protocols::match::downstream::DownstreamAlgorithm | |
| DownstreamAlgorithm(DownstreamAlgorithm const &) | protocols::match::downstream::DownstreamAlgorithm | |
| dsbuilders_ | protocols::match::downstream::ClassicMatchAlgorithm | private |
| exgeom_ids_ | protocols::match::downstream::ClassicMatchAlgorithm | private |
| external_sampler(core::Size external_geom_id) const | protocols::match::downstream::ClassicMatchAlgorithm | inline |
| external_samplers_ | protocols::match::downstream::ClassicMatchAlgorithm | private |
| generates_primary_hits() const override | protocols::match::downstream::ClassicMatchAlgorithm | virtual |
| geom_cst_id() const | protocols::match::downstream::DownstreamAlgorithm | |
| get_dsbuilder() const | protocols::match::downstream::DownstreamAlgorithm | |
| hits_to_include_with_partial_match(match_dspos1 const &m) const override | protocols::match::downstream::ClassicMatchAlgorithm | virtual |
| HTReal typedef | protocols::match::downstream::ClassicMatchAlgorithm | |
| launch_atom(core::Size external_geom_id, core::Size which_point) const | protocols::match::downstream::ClassicMatchAlgorithm | inline |
| launch_points_ | protocols::match::downstream::ClassicMatchAlgorithm | private |
| n_external_samplers() const | protocols::match::downstream::ClassicMatchAlgorithm | inline |
| n_possible_hits_per_upstream_conformation() const override | protocols::match::downstream::ClassicMatchAlgorithm | virtual |
| occspace_rev_id_at_last_update_ | protocols::match::downstream::ClassicMatchAlgorithm | private |
| operator=(DownstreamAlgorithm const &) | protocols::match::downstream::DownstreamAlgorithm | |
| parent typedef | protocols::match::downstream::ClassicMatchAlgorithm | |
| prepare_for_match_enumeration(Matcher const &) | protocols::match::downstream::DownstreamAlgorithm | virtual |
| Real typedef | protocols::match::downstream::ClassicMatchAlgorithm | |
| respond_to_peripheral_hitlist_change(Matcher &matcher) override | protocols::match::downstream::ClassicMatchAlgorithm | virtual |
| respond_to_primary_hitlist_change(Matcher &matcher, core::Size round_just_completed) override | protocols::match::downstream::ClassicMatchAlgorithm | virtual |
| restype() const | protocols::match::downstream::ClassicMatchAlgorithm | inline |
| restype_ | protocols::match::downstream::ClassicMatchAlgorithm | private |
| set_active_site_grid(ActiveSiteGridCOP active_site_grid) | protocols::match::downstream::DownstreamAlgorithm | |
| set_bb_grid(BumpGridCOP bbgrid) | protocols::match::downstream::DownstreamAlgorithm | |
| set_build_round1_hits_twice() | protocols::match::downstream::ClassicMatchAlgorithm | |
| set_dsbuilder(DownstreamBuilderOP dsbuilder) | protocols::match::downstream::DownstreamAlgorithm | |
| set_residue_type(core::chemical::ResidueTypeCOP restype) | protocols::match::downstream::ClassicMatchAlgorithm | |
| Size typedef | protocols::match::downstream::ClassicMatchAlgorithm | |
| upstream_only() const override | protocols::match::downstream::ClassicMatchAlgorithm | virtual |
| Vector typedef | protocols::match::downstream::DownstreamAlgorithm | |
| ~ClassicMatchAlgorithm() override | protocols::match::downstream::ClassicMatchAlgorithm | |
| ~DownstreamAlgorithm() override | protocols::match::downstream::DownstreamAlgorithm | |
1.8.7