NOTAA disallows residues specified in a following string, and allows packing. More...

#include <ResfileReader.hh>

Inheritance diagram for core::pack::task::NOTAA:

Public Member Functions
	NOTAA ()=default
	Default constructor. More...

ResfileCommandOP	clone () const override

void	initialize_from_tokens (utility::vector1< std::string > const &tokens, Size &which_token, Size resid) override
	NOTAA disallows residues specified in a following string, and allows packing the string should be formatted ALLCAPS with no spaces between residues using the standard single letter codes. More...

void	residue_action (PackerTask &, Size resid) const override
	Modify the packer task with the command that was read in. More...

void	add_base_name_to_exclude (std::string const &basename)
	Add a base name to the list of base names to exclude. More...

std::string	get_name () override

Public Member Functions inherited from core::pack::task::ResfileCommand
	~ResfileCommand () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...

Static Public Member Functions
static std::string	name ()

Private Attributes
utility::vector1< std::string >	basenames_to_exclude_

bool	initialized_ = false

Detailed Description

NOTAA disallows residues specified in a following string, and allows packing.

Constructor & Destructor Documentation

core::pack::task::NOTAA::NOTAA ( )

default

Default constructor.

Member Function Documentation

void core::pack::task::NOTAA::add_base_name_to_exclude ( std::string const & basename )

Add a base name to the list of base names to exclude.

Author: Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.tute.nosp@m..org).

ResfileCommandOP core::pack::task::NOTAA::clone ( ) const

inlineoverridevirtual

Implements core::pack::task::ResfileCommand.

std::string core::pack::task::NOTAA::get_name ( )

inlineoverridevirtual

Implements core::pack::task::ResfileCommand.

References name().

void core::pack::task::NOTAA::initialize_from_tokens	(	utility::vector1< std::string > const &	tokens,
		Size &	which_token,
		Size	resid
	)

overridevirtual

NOTAA disallows residues specified in a following string, and allows packing the string should be formatted ALLCAPS with no spaces between residues using the standard single letter codes.

Implements core::pack::task::ResfileCommand.

References protocols::cluster::calibur::aa, core::chemical::aa_from_oneletter_code(), protocols::vip::base_name(), core::pack::task::get_token(), core::chemical::na_ade, core::chemical::na_cyt, core::chemical::na_gua, core::chemical::na_thy, core::chemical::name_from_aa(), core::chemical::num_canonical_aas, core::chemical::oneletter_code_specifies_aa(), and core::pack::task::TR().