NearNativeLoopCloser.cc File Reference

#include <protocols/pose_length_moves/NearNativeLoopCloser.hh>
#include <protocols/pose_length_moves/NearNativeLoopCloserCreator.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/simple_moves/SwitchChainOrderMover.hh>
#include <protocols/jd2/util.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/util.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/sequence/ABEGOManager.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <core/id/TorsionID.hh>
#include <core/id/types.hh>
#include <protocols/indexed_structure_store/SSHashedFragmentStore.hh>
#include <protocols/indexed_structure_store/FragmentStore.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/Minimizer.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/CartesianMinimizer.hh>
#include <protocols/simple_moves/ConstrainToIdealMover.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/pose/Pose.hh>
#include <core/pose/variant_util.hh>
#include <core/pose/chains_util.hh>
#include <core/pose/subpose_manipulation_util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/scoring/func/CircularSplineFunc.hh>
#include <core/scoring/func/CircularHarmonicFunc.hh>
#include <core/scoring/func/Func.hh>
#include <core/scoring/func/Func.fwd.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/sequence/SSManager.hh>
#include <core/types.hh>
#include <basic/datacache/DataMap.hh>
#include <basic/datacache/DataCache.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/datacache/CacheableString.hh>
#include <basic/datacache/CacheableStringMap.hh>
#include <basic/options/keys/remodel.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <utility/string_util.hh>
#include <utility/vector1.hh>
#include <utility/tag/Tag.hh>
#include <utility/VirtualBase.hh>
#include <numeric/conversions.hh>
#include <numeric/alignment/QCPKernel.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/xyzTransform.hh>
#include <numeric/xyz.functions.hh>
#include <Eigen/Core>
#include <vector>
#include <iostream>
#include <sstream>
#include <map>
#include <set>
#include <ctime>
#include <utility/io/ozstream.hh>
#include <ObjexxFCL/format.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::pose_length_moves

Functions
static basic::Tracer	TR ("protocols.pose_length_moves.NearNativeLoopCloser")

Function Documentation

static basic::Tracer TR ( "protocols.pose_length_moves.NearNativeLoopCloser"  )

static