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protocols::loops::loop_mover::refine::LoopMover_Refine_CCD Member List

This is the complete list of members for protocols::loops::loop_mover::refine::LoopMover_Refine_CCD, including all inherited members.

add_fragments(core::fragment::FragSetOP fragset)protocols::loops::loop_mover::LoopMover
apply(core::pose::Pose &pose) overrideprotocols::loops::loop_mover::refine::LoopMover_Refine_CCDvirtual
clear_fragments()protocols::loops::loop_mover::LoopMover
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::loops::loop_mover::refine::LoopMover_Refine_CCDvirtual
create()protocols::moves::Movervirtual
current_cycle_number() const protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
current_cycle_number_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
debug_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
debugging_output(core::pose::Pose &pose)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
enforce_false_movemap(MoveMapOP &mm) const protocols::loops::loop_mover::LoopMoverprotected
false_movemap() const protocols::loops::loop_mover::LoopMover
false_movemap(MoveMapOP const &mm)protocols::loops::loop_mover::LoopMover
flank_residue_min() const protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
flank_residue_min_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
frag_libs() const protocols::loops::loop_mover::LoopMover
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_checkpoints()protocols::loops::loop_mover::LoopMover
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_loops() const protocols::loops::loop_mover::refine::LoopMover_Refine_CCD
get_name() const overrideprotocols::loops::loop_mover::refine::LoopMover_Refine_CCDvirtual
get_native_pose() const protocols::moves::Mover
get_new_ramping_scorefxn()protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
get_packer_task(core::pose::Pose const &pose)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
get_redesign_loop()protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_task_factory() const protocols::loops::loop_mover::refine::LoopMover_Refine_CCD
get_type() const protocols::moves::Moverinline
increase_chainbreak_weight_and_update_monte_carlo(core::Size iteration_number, core::scoring::ScoreFunctionOP local_scorefxn, protocols::moves::MonteCarlo &mc, core::pose::Pose &pose)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
inner_cycles() const protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
inner_cycles_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
LoopMover()protocols::loops::loop_mover::LoopMover
LoopMover(protocols::loops::LoopsOP loops_in)protocols::loops::loop_mover::LoopMover
LoopMover(protocols::loops::LoopsFileData const &loops_from_file)protocols::loops::loop_mover::LoopMover
LoopMover(protocols::loops::GuardedLoopsFromFileOP guarded_loops)protocols::loops::loop_mover::LoopMover
LoopMover(LoopMover const &rhs)protocols::loops::loop_mover::LoopMover
LoopMover_Refine_CCD()protocols::loops::loop_mover::refine::LoopMover_Refine_CCD
LoopMover_Refine_CCD(protocols::loops::LoopsOP loops_in)protocols::loops::loop_mover::refine::LoopMover_Refine_CCD
LoopMover_Refine_CCD(protocols::loops::LoopsOP loops_in, core::scoring::ScoreFunctionOP scorefxn)protocols::loops::loop_mover::refine::LoopMover_Refine_CCD
loops(protocols::loops::LoopsOP lptr)protocols::loops::loop_mover::LoopMover
loops(LoopsFileData const &loop_file_data)protocols::loops::loop_mover::LoopMover
loops(protocols::loops::loops_definers::LoopsDefinerOP setting)protocols::loops::loop_mover::LoopMover
loops(protocols::loops::GuardedLoopsFromFileOP guarded_loops)protocols::loops::loop_mover::LoopMover
loops() const protocols::loops::loop_mover::LoopMover
loops()protocols::loops::loop_mover::LoopMover
max_inner_cycles(core::Size value)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
max_inner_cycles_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
move_map() const protocols::loops::loop_mover::refine::LoopMover_Refine_CCD
move_map(core::kinematics::MoveMapOP mm)protocols::loops::loop_mover::refine::LoopMover_Refine_CCD
move_map_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
move_map_factory_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
MoveMapOP typedefprotocols::loops::loop_mover::LoopMover
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::loops::loop_mover::refine::LoopMover_Refine_CCDstatic
name()protocols::moves::Moverinlinestatic
operator=(LoopMover const &rhs)protocols::loops::loop_mover::LoopMover
original_fold_tree_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
outer_cycles(core::Size value)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
outer_cycles_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
packing_isolated_to_active_loops_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) overrideprotocols::loops::loop_mover::refine::LoopMover_Refine_CCDvirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const protocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDstatic
ramping_scorefxn()protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
ramping_scorefxn_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
read_options()protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprotected
redesign_loop_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprotected
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
repack_neighbors(bool s)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
repack_neighbors() const protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
repack_neighbors_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
repack_period(core::Size value)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
repack_period() const protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
repack_period_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
reset_status()protocols::moves::Mover
resolve_loop_indices(core::pose::Pose const &p)protocols::loops::loop_mover::LoopMoverprotected
scorefxn() const protocols::loops::loop_mover::LoopMover
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_default_settings()protocols::loops::loop_mover::refine::LoopMover_Refine_CCD
set_extended_torsions(core::pose::Pose &pose, Loop const &loop)protocols::loops::loop_mover::LoopMovervirtual
set_flank_residue_min(bool value)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
set_fold_tree_from_loops(bool const s)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
set_fold_tree_from_loops() const protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
set_fold_tree_from_loops_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
set_guarded_loops_not_in_charge()protocols::loops::loop_mover::LoopMover
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_loops_from_pose_observer_cache(core::pose::Pose const &pose)protocols::loops::loop_mover::LoopMoverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_redesign_loop(bool value=true)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
set_scorefxn(const core::scoring::ScoreFunctionOP score_in)protocols::loops::loop_mover::LoopMover
set_task_factory(core::pack::task::TaskFactoryCOP task_factory_in)protocols::loops::loop_mover::refine::LoopMover_Refine_CCD
set_type(std::string const &setting)protocols::moves::Moverinline
set_use_loops_from_observer_cache(bool const loops_from_observer_cache)protocols::loops::loop_mover::LoopMoverprotected
setup_foldtree_and_add_cutpoint_variants(core::pose::Pose &pose)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
setup_movemap(core::pose::Pose const &pose, protocols::loops::Loops const &loops, utility::vector1< bool > const &allow_repack, core::kinematics::MoveMapOP &movemap)protocols::loops::loop_mover::refine::LoopMover_Refine_CCD
show(std::ostream &output=std::cout) const overrideprotocols::loops::loop_mover::refine::LoopMover_Refine_CCDvirtual
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
task_factory_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprotected
temp_final(core::Real value)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
temp_final_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
temp_initial(core::Real value)protocols::loops::loop_mover::refine::LoopMover_Refine_CCDinline
temp_initial_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
torsion_features_string(core::pose::Pose const &pose) const protocols::loops::loop_mover::LoopMover
tr() const overrideprotocols::loops::loop_mover::refine::LoopMover_Refine_CCDprotectedvirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline
use_loops_from_observer_cache() const protocols::loops::loop_mover::LoopMoverprotected
user_defined_move_map_protocols::loops::loop_mover::refine::LoopMover_Refine_CCDprivate
~LoopMover() overrideprotocols::loops::loop_mover::LoopMover
~LoopMover_Refine_CCD() overrideprotocols::loops::loop_mover::refine::LoopMover_Refine_CCD
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