| chains_in_full_model() const | core::pose::full_model_info::FullModelParameters | |
| clone() const | core::pose::full_model_info::FullModelParameters | inline |
| conventional_chains() const | core::pose::full_model_info::FullModelParameters | inline |
| conventional_chains_ | core::pose::full_model_info::FullModelParameters | private |
| conventional_numbering() const | core::pose::full_model_info::FullModelParameters | inline |
| conventional_numbering_ | core::pose::full_model_info::FullModelParameters | private |
| conventional_segids() const | core::pose::full_model_info::FullModelParameters | inline |
| conventional_segids_ | core::pose::full_model_info::FullModelParameters | private |
| conventional_to_full(utility::vector1< int > const &res_list) const | core::pose::full_model_info::FullModelParameters | |
| conventional_to_full(std::tuple< utility::vector1< int >, utility::vector1< char >, utility::vector1< std::string > > const &resnum_and_chain_and_segid) const | core::pose::full_model_info::FullModelParameters | |
| conventional_to_full(int const res_num) const | core::pose::full_model_info::FullModelParameters | |
| conventional_to_full(int const res_num, char const chain, std::string const &segid=" ") const | core::pose::full_model_info::FullModelParameters | |
| convert_to_parameter_values_at_res(utility::vector1< Size > const &res_list) | core::pose::full_model_info::FullModelParameters | private |
| convert_to_parameter_values_at_res(std::map< Size, utility::vector1< Size > > const &res_lists) | core::pose::full_model_info::FullModelParameters | private |
| convert_to_res_lists_by_value(utility::vector1< Size > const ¶meter_values_at_res) | core::pose::full_model_info::FullModelParameters | private |
| cst_set() const | core::pose::full_model_info::FullModelParameters | |
| cst_set_ | core::pose::full_model_info::FullModelParameters | mutableprivate |
| cst_string() const | core::pose::full_model_info::FullModelParameters | inline |
| cst_string_ | core::pose::full_model_info::FullModelParameters | private |
| fill_parameter_values(utility::vector1< Size > ¶meter_values_at_res, Size const idx, utility::vector1< Size > const &res_list) const | core::pose::full_model_info::FullModelParameters | private |
| full_annotated_sequence() const | core::pose::full_model_info::FullModelParameters | |
| full_model_pose_for_constraints() const | core::pose::full_model_info::FullModelParameters | |
| full_model_pose_for_constraints_ | core::pose::full_model_info::FullModelParameters | mutableprivate |
| full_sequence() const | core::pose::full_model_info::FullModelParameters | inline |
| full_sequence_ | core::pose::full_model_info::FullModelParameters | private |
| full_to_conventional(utility::vector1< Size > const &res_list) const | core::pose::full_model_info::FullModelParameters | |
| full_to_conventional(Size const res_num) const | core::pose::full_model_info::FullModelParameters | |
| full_to_conventional_resnum_and_chain_and_segid(utility::vector1< Size > const &res_list) const | core::pose::full_model_info::FullModelParameters | |
| full_to_conventional_resnum_and_chain_and_segid(Size const res_num) const | core::pose::full_model_info::FullModelParameters | |
| FullModelParameters() | core::pose::full_model_info::FullModelParameters | |
| FullModelParameters(std::string const &full_sequence) | core::pose::full_model_info::FullModelParameters | |
| FullModelParameters(std::string const &full_sequence, utility::vector1< Size > const &cutpoint_open_in_full_model, utility::vector1< Size > const &res_numbers_in_pose) | core::pose::full_model_info::FullModelParameters | |
| FullModelParameters(pose::Pose const &pose, utility::vector1< Size > &res_list) | core::pose::full_model_info::FullModelParameters | |
| FullModelParameters(FullModelParameters const &src) | core::pose::full_model_info::FullModelParameters | |
| get_cutpoint_open_from_pdb_info(pose::Pose const &pose, utility::vector1< Size > const &res_list) const | core::pose::full_model_info::FullModelParameters | private |
| get_parameter(FullModelParameterType const type) const | core::pose::full_model_info::FullModelParameters | |
| get_parameter_as_res_lists(FullModelParameterType const type) const | core::pose::full_model_info::FullModelParameters | |
| get_res_list(FullModelParameterType const type, Size const value) const | core::pose::full_model_info::FullModelParameters | |
| get_res_list(FullModelParameterType const type) const | core::pose::full_model_info::FullModelParameters | inline |
| get_res_list_as_pairs(FullModelParameterType const type) const | core::pose::full_model_info::FullModelParameters | |
| get_sequence_with_gaps_filled_with_n(pose::Pose const &pose, std::string &sequence, utility::vector1< int > &conventional_numbering, utility::vector1< char > &conventional_chains, utility::vector1< std::string > &conventional_segids, utility::vector1< Size > &res_list) const | core::pose::full_model_info::FullModelParameters | private |
| global_mapping() const | core::pose::full_model_info::FullModelParameters | inline |
| global_mapping_ | core::pose::full_model_info::FullModelParameters | private |
| global_sequence() const | core::pose::full_model_info::FullModelParameters | inline |
| global_sequence_ | core::pose::full_model_info::FullModelParameters | private |
| has_conventional_residue(int const res_num) const | core::pose::full_model_info::FullModelParameters | |
| has_conventional_residue(int const res_num, char const chain, std::string const &segid=" ") const | core::pose::full_model_info::FullModelParameters | |
| keep_chain_and_cutpoint_open_matched(FullModelParameterType const &type) | core::pose::full_model_info::FullModelParameters | private |
| non_standard_residue_map() const | core::pose::full_model_info::FullModelParameters | inline |
| non_standard_residue_map_ | core::pose::full_model_info::FullModelParameters | private |
| non_standard_residue_map_nonconst() | core::pose::full_model_info::FullModelParameters | inline |
| operator!=(FullModelParameters const &a, FullModelParameters const &b) | core::pose::full_model_info::FullModelParameters | friend |
| operator<<(std::ostream &os, FullModelParameters const &t) | core::pose::full_model_info::FullModelParameters | friend |
| operator==(FullModelParameters const &a, FullModelParameters const &b) | core::pose::full_model_info::FullModelParameters | friend |
| operator>>(std::istream &is, FullModelParameters &t) | core::pose::full_model_info::FullModelParameters | friend |
| parameter_values_as_res_lists_ | core::pose::full_model_info::FullModelParameters | private |
| parameter_values_at_res_ | core::pose::full_model_info::FullModelParameters | private |
| parent_full_model_parameters() const | core::pose::full_model_info::FullModelParameters | inline |
| parent_full_model_parameters_ | core::pose::full_model_info::FullModelParameters | private |
| read_cst_file(std::string const &cst_file) | core::pose::full_model_info::FullModelParameters | |
| read_disulfides(std::string const &disulfide_file) | core::pose::full_model_info::FullModelParameters | |
| read_global_seq_info(std::string const &global_seq_file) | core::pose::full_model_info::FullModelParameters | |
| set_conventional_chains(utility::vector1< char > const &setting) | core::pose::full_model_info::FullModelParameters | inline |
| set_conventional_numbering(utility::vector1< int > const &setting) | core::pose::full_model_info::FullModelParameters | inline |
| set_conventional_segids(utility::vector1< std::string > const &setting) | core::pose::full_model_info::FullModelParameters | inline |
| set_cst_string(std::string const &setting) | core::pose::full_model_info::FullModelParameters | inline |
| set_non_standard_residue_map(std::map< Size, std::string > const &setting) | core::pose::full_model_info::FullModelParameters | inline |
| set_parameter(FullModelParameterType const type, utility::vector1< Size > const &setting) | core::pose::full_model_info::FullModelParameters | |
| set_parameter_as_res_list(FullModelParameterType const type, utility::vector1< Size > const &setting) | core::pose::full_model_info::FullModelParameters | |
| set_parameter_as_res_list_in_pairs(FullModelParameterType const type, utility::vector1< Size > const &setting) | core::pose::full_model_info::FullModelParameters | |
| set_parameter_as_res_lists(FullModelParameterType const type, std::map< Size, utility::vector1< Size > > const &setting) | core::pose::full_model_info::FullModelParameters | |
| set_parent_full_model_parameters(FullModelParametersCOP setting) | core::pose::full_model_info::FullModelParameters | inline |
| set_slice_res_list(utility::vector1< Size > const &setting) | core::pose::full_model_info::FullModelParameters | inline |
| size() const | core::pose::full_model_info::FullModelParameters | |
| slice(utility::vector1< Size > const &slice_res) const | core::pose::full_model_info::FullModelParameters | |
| slice_res_list() const | core::pose::full_model_info::FullModelParameters | inline |
| slice_res_list_ | core::pose::full_model_info::FullModelParameters | private |
| update_pose_and_cst_set_from_cst_string(chemical::ResidueTypeSet const &rsd_type_set) const | core::pose::full_model_info::FullModelParameters | |
| ~FullModelParameters() override | core::pose::full_model_info::FullModelParameters | |
1.8.7