protocols::simple_filters::ResidueDepthCalculator Member List

This is the complete list of members for protocols::simple_filters::ResidueDepthCalculator, including all inherited members.

append_unitbox(utility::vector1< core::Vector > const &unitbox, utility::vector1< core::Vector > &waterbox_dupl, core::Vector const boxwidth, int const i, int const j, int const k) const	protocols::simple_filters::ResidueDepthCalculator	private
bring_to_origin(utility::vector1< core::Vector > &protein_crd, core::Vector &maxcrds, core::Vector &mincrds) const	protocols::simple_filters::ResidueDepthCalculator	private
dcut1_	protocols::simple_filters::ResidueDepthCalculator	private
dcut2_	protocols::simple_filters::ResidueDepthCalculator	private
duplicate_waterbox(utility::vector1< core::Vector > const &unit_waterbox_crd, core::Vector const boxwidth, core::Vector const mincrds, core::Vector const maxcrds) const	protocols::simple_filters::ResidueDepthCalculator	private
estimate_sidechain_depth(core::pose::Pose const &pose) const	protocols::simple_filters::ResidueDepthCalculator
get_coarse_crd(utility::vector1< core::Vector > const &protein_crd, utility::vector1< core::Size > const &coarse_index) const	protocols::simple_filters::ResidueDepthCalculator	private
get_exclusion_index(utility::vector1< core::Vector > const &protein_crd, utility::vector1< core::Vector > const &protein_coarse_crd) const	protocols::simple_filters::ResidueDepthCalculator	private
get_pose_crd_and_index(core::pose::Pose const &pose, utility::vector1< core::Vector > &protein_crd, utility::vector1< core::Size > &coarse_index, utility::vector1< core::Size > &res_id) const	protocols::simple_filters::ResidueDepthCalculator	private
get_scdepth(utility::vector1< bool > const &excluded_wat, utility::vector1< core::Vector > const &protein_crd, utility::vector1< core::Size > const &res_id) const	protocols::simple_filters::ResidueDepthCalculator	private
get_scdepth_avrg(core::Size const ires) const	protocols::simple_filters::ResidueDepthCalculator	inline
get_scdepth_avrg() const	protocols::simple_filters::ResidueDepthCalculator	inline
get_scdepth_fvar() const	protocols::simple_filters::ResidueDepthCalculator	inline
get_scdepth_sdev() const	protocols::simple_filters::ResidueDepthCalculator	inline
initialize()	protocols::simple_filters::ResidueDepthCalculator	private
niter(core::Size const value)	protocols::simple_filters::ResidueDepthCalculator	inline
niter_	protocols::simple_filters::ResidueDepthCalculator	private
nres() const	protocols::simple_filters::ResidueDepthCalculator	inline
nres_	protocols::simple_filters::ResidueDepthCalculator	mutableprivate
pert_protein(utility::vector1< core::Vector > &protein_crd) const	protocols::simple_filters::ResidueDepthCalculator	private
quat2U(core::Vector const &quat3, core::Real const &quatw) const	protocols::simple_filters::ResidueDepthCalculator	private
read_unit_waterbox(core::Vector &boxwidth) const	protocols::simple_filters::ResidueDepthCalculator	private
report_crd(bool const value)	protocols::simple_filters::ResidueDepthCalculator	inline
report_crd_	protocols::simple_filters::ResidueDepthCalculator	private
ResidueDepthCalculator()	protocols::simple_filters::ResidueDepthCalculator
sc_depth_avrg_	protocols::simple_filters::ResidueDepthCalculator	mutableprivate
sc_depth_fvar_	protocols::simple_filters::ResidueDepthCalculator	mutableprivate
sc_depth_sdev_	protocols::simple_filters::ResidueDepthCalculator	mutableprivate
set_dcut1(core::Real const value)	protocols::simple_filters::ResidueDepthCalculator	inline
set_dcut2(core::Real const value)	protocols::simple_filters::ResidueDepthCalculator	inline
stack_and_getaverage(utility::vector1< utility::vector1< core::Real > > &sc_depth_stack, utility::vector1< core::Real > const &sc_depth, core::Size const niter) const	protocols::simple_filters::ResidueDepthCalculator	private
use_bb_	protocols::simple_filters::ResidueDepthCalculator	private
use_sc_	protocols::simple_filters::ResidueDepthCalculator	private
waterbox_	protocols::simple_filters::ResidueDepthCalculator	mutableprivate
waterbox_file_	protocols::simple_filters::ResidueDepthCalculator	private
~ResidueDepthCalculator()	protocols::simple_filters::ResidueDepthCalculator