protocols::score_filters::GeometryFilter Class Reference

#include <GeometryFilter.hh>

Inheritance diagram for protocols::score_filters::GeometryFilter:

Public Member Functions
	GeometryFilter ()
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
core::Size	compute (core::pose::Pose const &pose) const
filters::FilterOP	clone () const override
filters::FilterOP	fresh_instance () const override
	~GeometryFilter () override
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Real	omega_cutoff_
core::Real	cart_bonded_cutoff_
std::string	filename_
core::Real	cst_cutoff_
core::Size	start_
core::Size	end_
bool	count_bad_residues_
core::select::residue_selector::ResidueSelectorCOP	selector_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::score_filters::GeometryFilter::GeometryFilter

(

)

protocols::score_filters::GeometryFilter::~GeometryFilter ( )

overridedefault

Member Function Documentation

bool protocols::score_filters::GeometryFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute().

std::string protocols::score_filters::GeometryFilter::class_name ( )

static

Referenced by protocols::score_filters::GeometryFilterCreator::keyname(), name(), and provide_xml_schema().

filters::FilterOP protocols::score_filters::GeometryFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

core::Size protocols::score_filters::GeometryFilter::compute

(

core::pose::Pose const &

pose

)

const

References core::scoring::atom_pair_constraint, core::scoring::cart_bonded, cart_bonded_cutoff_, cst_cutoff_, end_, core::pose::symmetry::extract_asymmetric_unit(), filename_, core::scoring::get_score_function(), core::conformation::symmetry::is_symmetric(), protocols::mean_field::max(), protocols::mean_field::min(), core::scoring::omega, omega_cutoff_, protocols::filters::Filter::score(), selector_, protocols::loops::start, start_, protocols::loops::stop, and core::pose::Pose::update_residue_neighbors().

Referenced by apply(), report(), and report_sm().

filters::FilterOP protocols::score_filters::GeometryFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

std::string protocols::score_filters::GeometryFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::score_filters::GeometryFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References cart_bonded_cutoff_, count_bad_residues_, cst_cutoff_, end_, filename_, omega_cutoff_, core::select::residue_selector::parse_residue_selector(), selector_, and start_.

void protocols::score_filters::GeometryFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References core::select::residue_selector::attributes_for_parse_residue_selector(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::score_filters::GeometryFilterCreator::provide_xml_schema().

void protocols::score_filters::GeometryFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::score_filters::GeometryFilter::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and count_bad_residues_.

Member Data Documentation

core::Real protocols::score_filters::GeometryFilter::cart_bonded_cutoff_

private

Referenced by compute(), and parse_my_tag().

bool protocols::score_filters::GeometryFilter::count_bad_residues_

private

Referenced by parse_my_tag(), and report_sm().

core::Real protocols::score_filters::GeometryFilter::cst_cutoff_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::score_filters::GeometryFilter::end_

private

Referenced by compute(), and parse_my_tag().

std::string protocols::score_filters::GeometryFilter::filename_

private

Referenced by compute(), and parse_my_tag().

core::Real protocols::score_filters::GeometryFilter::omega_cutoff_

private

Referenced by compute(), and parse_my_tag().

core::select::residue_selector::ResidueSelectorCOP protocols::score_filters::GeometryFilter::selector_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::score_filters::GeometryFilter::start_

private

Referenced by compute(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/score_filters/GeometryFilter.hh
• src/protocols/score_filters/GeometryFilter.cc