| angle_diff(core::Real a1, core::Real a2) | protocols::make_rot_lib::MakeRotLibMover | |
| apply(core::pose::Pose &pose) override | protocols::make_rot_lib::MakeRotLibMover | virtual |
| bbs_appropriate_for_definitions(utility::vector1< core::Real > bbs) | protocols::make_rot_lib::MakeRotLibMover | |
| calc_all_dist() | protocols::make_rot_lib::MakeRotLibMover | |
| calc_centroids() | protocols::make_rot_lib::MakeRotLibMover | |
| calc_dist(RotData &rd1, RotData &rd2) | protocols::make_rot_lib::MakeRotLibMover | |
| calc_final_rotamer_probs() | protocols::make_rot_lib::MakeRotLibMover | |
| calc_final_rotamers() | protocols::make_rot_lib::MakeRotLibMover | |
| calc_medoids() | protocols::make_rot_lib::MakeRotLibMover | |
| calc_rotamer_clusters() | protocols::make_rot_lib::MakeRotLibMover | |
| calc_running_avg(core::Real angle_new, core::Real &angle_old, core::Size &count) | protocols::make_rot_lib::MakeRotLibMover | |
| calc_standard_deviations(core::pose::Pose &pose, utility::vector1< core::Real > bbs, utility::vector1< core::Size > bb_ids, MakeRotLibPolymerType polymer_type) | protocols::make_rot_lib::MakeRotLibMover | |
| centroids_ | protocols::make_rot_lib::MakeRotLibMover | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| final_rotamers_ | protocols::make_rot_lib::MakeRotLibMover | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::make_rot_lib::MakeRotLibMover | inlinevirtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init_centroids(CentroidRotNumVecVec const ¢roid_data, core::Size num_chi, bool semirotameric) | protocols::make_rot_lib::MakeRotLibMover | |
| init_rotamers(TorsionRangeVec const &chi_ranges, core::Size num_clusters, core::Real omg, utility::vector1< core::Real > bbs, utility::vector1< core::Size > bbids, core::Real eps, bool semirotameric) | protocols::make_rot_lib::MakeRotLibMover | |
| KbT_ | protocols::make_rot_lib::MakeRotLibMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| make_three_fold_symmetry_90_210_330(RotDataVec &rdv, core::Size chi_num) | protocols::make_rot_lib::MakeRotLibMover | |
| make_two_fold_symmetry_0_180(RotDataVec &rdv, core::Size chi_num) | protocols::make_rot_lib::MakeRotLibMover | |
| make_two_fold_symmetry_135_315(RotDataVec &rdv, core::Size chi_num) | protocols::make_rot_lib::MakeRotLibMover | |
| MakeRotLibMover(bool const write_log_file=true) | protocols::make_rot_lib::MakeRotLibMover | |
| minimize_all_rotamers(core::pose::Pose &pose, utility::vector1< core::Real > bbs, utility::vector1< core::Size > bb_ids, MakeRotLibPolymerType polymer_type) | protocols::make_rot_lib::MakeRotLibMover | |
| minimize_rotamer(RotData &rd, core::pose::Pose &pose, utility::vector1< core::Real > bbs, utility::vector1< core::Size > bb_ids, MakeRotLibPolymerType polymer_type) | protocols::make_rot_lib::MakeRotLibMover | |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| print_avg_cluster_centroid_dist(std::ostream &os) | protocols::make_rot_lib::MakeRotLibMover | |
| print_definitions(std::ostream &os) | protocols::make_rot_lib::MakeRotLibMover | |
| print_dunbrack02_rotlib(core::Real omg, utility::vector1< core::Real > bbs, utility::vector1< core::Size > bbids, core::Real eps, MakeRotLibPolymerType polymer_type, std::ostream &os) | protocols::make_rot_lib::MakeRotLibMover | |
| print_dunbrack10_rotlib(core::Real omg, utility::vector1< core::Real > bbs, utility::vector1< core::Size > bbids, core::Real eps, MakeRotLibPolymerType polymer_type, std::ostream &os) | protocols::make_rot_lib::MakeRotLibMover | |
| print_rot_data(RotData &rd, utility::vector1< core::Size > bb_ids, std::ostream &os) | protocols::make_rot_lib::MakeRotLibMover | |
| print_rot_data_vec(RotDataVec &rdv, utility::vector1< core::Size > bb_ids, std::ostream &os) | protocols::make_rot_lib::MakeRotLibMover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| rotamers_ | protocols::make_rot_lib::MakeRotLibMover | private |
| scrfxn_ | protocols::make_rot_lib::MakeRotLibMover | private |
| seed_centroids(bool semirotameric) | protocols::make_rot_lib::MakeRotLibMover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| write_log_file_ | protocols::make_rot_lib::MakeRotLibMover | private |
| ~MakeRotLibMover() override=default | protocols::make_rot_lib::MakeRotLibMover | |