#include <CSTalosIO.hh>

Public Member Functions
	CSTalosIO ()

	CSTalosIO (std::string file_name)

utility::vector1 < utility::vector1< std::pair < core::Size, core::Real > > >	repack_to_matrix ()

core::Size	get_first_residue_id () const

core::Size	get_last_residue_id () const

std::string	get_sequence () const

bool	has_entry (core::Size residue_id)

void	get_tuples (core::Size, utility::vector1< boost::tuple< core::Size, char, std::string, core::Real > >)

void	get_tuples (core::Size, utility::vector1< boost::tuple< core::Size, char, std::string, core::Real > > &) const

utility::vector1< boost::tuple < core::Size, char, std::string, core::Real > >	get_entries ()

void	write (std::ostream &)

void	read (std::string const &)

core::Real	get_shift (core::Size, std::string const &) const

bool	has_atom (core::Size, std::string const &) const

Private Member Functions
void	print_sequence (std::string const &, std::ostream &) const

void	set_up_atom_order ()

Private Attributes
std::string	data_format_

std::string	sequence_

utility::vector1< std::string >	column_names_

core::Size	first_residue_index_

utility::vector1< boost::tuple < core::Size, char, std::string, core::Real > >	entries_

std::multimap< core::Size, core::Size >	resids_to_entries_map_

std::map< std::string, core::Size >	order_of_atoms_

utility::vector1< boost::tuple < core::Size, char, std::string, core::Real > >	used_for_searching_

Constructor & Destructor Documentation

protocols::frag_picker::CSTalosIO::CSTalosIO ( )

inline

References first_residue_index_, and set_up_atom_order().

protocols::frag_picker::CSTalosIO::CSTalosIO ( std::string file_name )

inline

References first_residue_index_, read(), and set_up_atom_order().

Member Function Documentation

utility::vector1<boost::tuple<core::Size, char, std::string, core::Real> > protocols::frag_picker::CSTalosIO::get_entries ( )

inline

References entries_.

core::Size protocols::frag_picker::CSTalosIO::get_first_residue_id ( ) const

inline

References first_residue_index_.

core::Size protocols::frag_picker::CSTalosIO::get_last_residue_id ( ) const

inline

References first_residue_index_, and sequence_.

std::string protocols::frag_picker::CSTalosIO::get_sequence ( ) const

inline

References sequence_.

Referenced by protocols::frag_picker::CS2ndShift::CS2ndShift().

core::Real protocols::frag_picker::CSTalosIO::get_shift	(	core::Size	residue_id,
		std::string const &	atom_name
	)		const

Referenced by protocols::frag_picker::CS2ndShift::CS2ndShift().

void protocols::frag_picker::CSTalosIO::get_tuples	(	core::Size	residue_id,
		utility::vector1< boost::tuple< core::Size, char, std::string, core::Real > >	results
	)

void protocols::frag_picker::CSTalosIO::get_tuples	(	core::Size	residue_id,
		utility::vector1< boost::tuple< core::Size, char, std::string, core::Real > > &	results
	)		const

bool protocols::frag_picker::CSTalosIO::has_atom	(	core::Size	residue_id,
		std::string const &	atom_name
	)		const

Referenced by protocols::frag_picker::CS2ndShift::CS2ndShift().

bool protocols::frag_picker::CSTalosIO::has_entry ( core::Size residue_id )

inline

References resids_to_entries_map_.

void protocols::frag_picker::CSTalosIO::print_sequence	(	std::string const &	,
		std::ostream &
	)		const

private

void protocols::frag_picker::CSTalosIO::read ( std::string const & file_name )

References protocols::cluster::calibur::aa, protocols::hybridization::t, and protocols::frag_picker::tr().

Referenced by CSTalosIO().

utility::vector1< utility::vector1< std::pair< core::Size, core::Real > > > protocols::frag_picker::CSTalosIO::repack_to_matrix ( )

void protocols::frag_picker::CSTalosIO::set_up_atom_order ( )

private

Referenced by CSTalosIO().

void protocols::frag_picker::CSTalosIO::write ( std::ostream & out )

Referenced by protocols::frag_picker::scores::MakeAmbigCSScore::make().

Member Data Documentation

utility::vector1<std::string> protocols::frag_picker::CSTalosIO::column_names_

private

std::string protocols::frag_picker::CSTalosIO::data_format_

private

utility::vector1<boost::tuple<core::Size, char, std::string, core::Real> > protocols::frag_picker::CSTalosIO::entries_

private

Referenced by get_entries().

core::Size protocols::frag_picker::CSTalosIO::first_residue_index_

private

Referenced by CSTalosIO(), get_first_residue_id(), and get_last_residue_id().

std::map<std::string, core::Size> protocols::frag_picker::CSTalosIO::order_of_atoms_

private

std::multimap<core::Size, core::Size> protocols::frag_picker::CSTalosIO::resids_to_entries_map_

private

Referenced by has_entry().

std::string protocols::frag_picker::CSTalosIO::sequence_

private

Referenced by get_last_residue_id(), and get_sequence().

utility::vector1<boost::tuple<core::Size, char, std::string, core::Real> > protocols::frag_picker::CSTalosIO::used_for_searching_

private

The documentation for this class was generated from the following files:

src/protocols/frag_picker/CSTalosIO.hh
src/protocols/frag_picker/CSTalosIO.cc

Public Member Functions

Private Member Functions

Private Attributes

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation