| atom_id_mapper_to_vanilla_chunk_pose_ | core::import_pose::libraries::ChunkSet | private |
| atom_id_mask_ | core::import_pose::libraries::ChunkSet | private |
| check_fold_tree_OK(core::pose::Pose const &pose) const | core::import_pose::libraries::ChunkSet | |
| ChunkSet(utility::vector1< core::pose::PoseOP > const &pose_list, core::pose::ResMap const &res_map) | core::import_pose::libraries::ChunkSet | |
| ChunkSet(utility::vector1< core::pose::MiniPoseOP > const &mini_pose_list, core::pose::Pose const &example_pose, core::pose::ResMap const &res_map) | core::import_pose::libraries::ChunkSet | |
| filter_atom_id_map_with_mask(std::map< core::id::AtomID, core::id::AtomID > &atom_id_map) const | core::import_pose::libraries::ChunkSet | private |
| filter_poses_have_same_sequence_and_variants() | core::import_pose::libraries::ChunkSet | private |
| get_atom_id_domain_map_for_rosetta_library_chunk(std::map< core::id::AtomID, core::id::AtomID > atom_id_map, core::pose::Pose const &pose, core::pose::toolbox::AtomLevelDomainMap const &atom_level_domain_map, bool do_rosetta_library_domain_check=true) const | core::import_pose::libraries::ChunkSet | private |
| get_atom_id_map(core::pose::Pose &pose, core::pose::toolbox::AtomID_Mapper const &atom_id_mapper_to_target_vanilla_pose) const | core::import_pose::libraries::ChunkSet | |
| insert_chunk_into_pose(core::pose::Pose &pose, Size const &chunk_pose_index, core::pose::toolbox::AtomLevelDomainMapCOP atom_level_domain_map, bool do_rosetta_library_domain_check=true) const | core::import_pose::libraries::ChunkSet | |
| insert_protein_chunk_into_pose(core::pose::Pose &pose, Size const &chunk_pose_index, core::pose::toolbox::AtomLevelDomainMapCOP atom_level_domain_map, bool do_rosetta_library_domain_check=true) const | core::import_pose::libraries::ChunkSet | |
| mini_pose(Size const idx) const | core::import_pose::libraries::ChunkSet | |
| mini_pose_list_ | core::import_pose::libraries::ChunkSet | private |
| num_chunks() const | core::import_pose::libraries::ChunkSet | inline |
| res_map() const | core::import_pose::libraries::ChunkSet | inline |
| res_map_ | core::import_pose::libraries::ChunkSet | private |
| set_user_input(bool const &setting) | core::import_pose::libraries::ChunkSet | inline |
| setup_atom_id_mapper_to_vanilla_chunk_pose(core::pose::Pose const &pose) | core::import_pose::libraries::ChunkSet | private |
| setup_atom_id_mask(core::pose::Pose const &pose) | core::import_pose::libraries::ChunkSet | private |
| setup_atom_id_mask_and_mapper(core::pose::Pose const &pose) | core::import_pose::libraries::ChunkSet | private |
| user_input() const | core::import_pose::libraries::ChunkSet | inline |
| user_input_ | core::import_pose::libraries::ChunkSet | private |
| ~ChunkSet() override | core::import_pose::libraries::ChunkSet | |
1.8.7