RNA_FragmentMonteCarlo.cc File Reference

Fragment Assembly of RNA (FARNA) with full-atom refinement (FARFAR). More...

#include <protocols/rna/denovo/RNA_FragmentMonteCarlo.hh>
#include <core/fragment/rna/RNA_FragmentHomologyExclusion.hh>
#include <protocols/rna/denovo/movers/RNA_FragmentMover.hh>
#include <core/import_pose/RNA_BasePairHandler.hh>
#include <core/import_pose/libraries/RNA_ChunkLibrary.hh>
#include <core/import_pose/libraries/RNA_LibraryManager.hh>
#include <core/import_pose/RNA_JumpMover.hh>
#include <protocols/rna/denovo/movers/RNA_HelixMover.hh>
#include <protocols/rna/denovo/movers/RNA_DeNovoMasterMover.hh>
#include <protocols/rna/denovo/movers/RNA_Minimizer.hh>
#include <protocols/rna/denovo/movers/RNA_Relaxer.hh>
#include <protocols/rna/denovo/movers/RNP_HighResMover.hh>
#include <protocols/rna/movers/RNA_LoopCloser.hh>
#include <protocols/rna/denovo/RNA_DeNovoPoseInitializer.hh>
#include <core/pose/rna/secstruct_legacy/RNA_SecStructLegacyInfo.hh>
#include <core/import_pose/libraries/BasePairStepLibrary.hh>
#include <protocols/rna/denovo/util.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.hh>
#include <protocols/stepwise/modeler/align/util.hh>
#include <protocols/stepwise/modeler/align/StepWisePoseAligner.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <core/pose/toolbox/AtomLevelDomainMap.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <core/kinematics/ShortestPathInFoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/pose/rna/util.hh>
#include <core/pose/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/import_pose/libraries/ChunkSet.hh>
#include <core/import_pose/options/RNA_FragmentMonteCarloOptions.hh>
#include <basic/options/option.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pose/copydofs/util.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rna/RNA_ScoringInfo.hh>
#include <basic/database/open.hh>
#include <basic/Tracer.hh>
#include <ctime>
#include <utility/tools/make_vector.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::rna
	protocols::rna::denovo

Functions
static basic::Tracer	TR ("protocols.rna.denovo.RNA_FragmentMonteCarlo")

Detailed Description

Fragment Assembly of RNA (FARNA) with full-atom refinement (FARFAR).

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Function Documentation

static basic::Tracer TR ( "protocols.rna.denovo.RNA_FragmentMonteCarlo"  )

static