| apply(core::pose::Pose &pose) override | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | virtual |
| apply(core::pose::Pose &pose, core::Size const &cycle_number) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| close_loops() const | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | inline |
| close_loops_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| create() | protocols::moves::Mover | virtual |
| do_move_trial(core::Size const &i, core::pose::Pose &pose) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| do_random_moves(core::pose::Pose &pose, core::Size const &monte_carlo_cycles, bool const &check_num_rna_res=false) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | |
| do_rnp_docking_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| dock_into_density_freq_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| dock_into_density_mover_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| dock_into_density_trial(core::pose::Pose &pose) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| frag_size() const | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | inline |
| frag_size_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | inlinevirtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| jump_change_frequency_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| move_type() const | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | inline |
| move_type_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| options_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| random_chunk_trial(core::pose::Pose &pose) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| random_fragment_trial(core::pose::Pose &pose) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| random_jump_trial(core::pose::Pose &pose) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| randomize_rigid_body_orientations(core::pose::Pose &pose) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| randomize_rnp_rigid_body_orientations(core::pose::Pose &pose) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| rigid_body_mover_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| rna_chunk_library_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| RNA_DeNovoMasterMover(core::import_pose::options::RNA_FragmentMonteCarloOptionsCOP options, core::pose::toolbox::AtomLevelDomainMapCOP atom_level_domain_map, core::import_pose::RNA_BasePairHandlerCOP rna_base_pair_handler, protocols::rna::movers::RNA_LoopCloserOP rna_loop_closer, core::import_pose::libraries::RNA_ChunkLibraryOP rna_chunk_library, core::scoring::ScoreFunctionOP sfxn) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | |
| rna_fragment_mover() | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | inline |
| rna_fragment_mover_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| rna_helix_mover() | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | inline |
| rna_helix_mover_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| rna_jump_mover() | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | inline |
| rna_jump_mover_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| rna_loop_closer_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| RNA_move_trial(core::pose::Pose &pose) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| rnp_docking_ft_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| rnp_docking_mover_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| rnp_docking_trial(core::pose::Pose &pose) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| search_rigid_body_orientation(core::pose::Pose &pose) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | |
| set_close_loops(bool const &setting) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_frag_size(core::Size const &setting) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | inline |
| set_helix_mover_magnitude(core::Real const &rot_mag, core::Real const &trans_mag) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_rna_helix_mover(movers::RNA_HelixMoverOP const rna_helix_mover) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | inline |
| set_sfxn(core::scoring::ScoreFunctionOP const &sfxn) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | inline |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| setup_dock_into_density_mover(core::pose::Pose const &pose, core::Real const &rot_mag, core::Real const &trans_mag) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | |
| setup_rigid_body_mover(core::pose::Pose const &pose, core::Real const &rot_mag, core::Real const &trans_mag) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | |
| setup_rna_protein_docking_mover(core::pose::Pose const &pose, core::Real const &rot_mag, core::Real const &trans_mag) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | |
| setup_rnp_fold_tree(core::pose::Pose &pose, bool const &refine_pose, bool const &randomize) | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | |
| sfxn_ | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| success() const | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | inline |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| ~RNA_DeNovoMasterMover() override | protocols::rna::denovo::movers::RNA_DeNovoMasterMover | |
1.8.7