RNA_DeNovoProtocolMover.cc File Reference

#include <protocols/rna/denovo/movers/RNA_DeNovoProtocolMover.hh>
#include <protocols/rna/denovo/movers/RNA_DeNovoProtocolMoverCreator.hh>
#include <core/import_pose/RNA_DeNovoParameters.hh>
#include <core/import_pose/options/RNA_DeNovoProtocolOptions.hh>
#include <core/import_pose/RNA_HelixAssembler.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/id/AtomID.hh>
#include <core/id/NamedAtomID.hh>
#include <core/id/SequenceMapping.hh>
#include <core/sequence/util.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/rna/chemical_shift/RNA_ChemicalShiftPotential.hh>
#include <core/scoring/func/FadeFunc.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <core/io/rna/RNA_DataReader.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/full_model_info/FullModelParameters.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/pose/rna/util.hh>
#include <core/pose/util.hh>
#include <core/pose/subpose_manipulation_util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/pose/rna/leontis_westhof_util.hh>
#include <core/pose/rna/RNA_SecStruct.hh>
#include <protocols/viewer/viewers.hh>
#include <protocols/rna/denovo/RNA_FragmentMonteCarlo.hh>
#include <protocols/rna/movers/RNA_LoopCloser.hh>
#include <protocols/rna/denovo/movers/RNA_Minimizer.hh>
#include <core/import_pose/RNA_BasePairHandler.hh>
#include <protocols/rna/denovo/RNA_DeNovoPoseInitializer.hh>
#include <core/import_pose/libraries/RNA_ChunkLibrary.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/rna/RNA_ScoringInfo.hh>
#include <core/pose/rna/RNA_BasePairClassifier.hh>
#include <protocols/rna/denovo/util.hh>
#include <protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.hh>
#include <protocols/scoring/VDW_CachedRepScreenInfo.hh>
#include <protocols/jd2/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/keys/stepwise.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <utility/options/OptionCollection.hh>
#include <utility/options/keys/OptionKeyList.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>
#include <utility/tag/Tag.hh>
#include <utility/string_util.hh>
#include <ObjexxFCL/format.hh>
#include <basic/Tracer.hh>
#include <utility/io/izstream.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::rna
	protocols::rna::denovo
	protocols::rna::denovo::movers

Functions
static basic::Tracer	TR ("protocols.rna.denovo.movers.RNA_DeNovoProtocolMover")

Detailed Description

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Andy Watkins, amw57.nosp@m.9@st.nosp@m.anfor.nosp@m.d.ed.nosp@m.u

Function Documentation

static basic::Tracer TR ( "protocols.rna.denovo.movers.RNA_DeNovoProtocolMover"  )

static