core::scoring::constraints::BasePairConstraint Member List

This is the complete list of members for core::scoring::constraints::BasePairConstraint, including all inherited members.

atom(Size const n) const override	core::scoring::constraints::BasePairConstraint	inlinevirtual
AtomID typedef	core::scoring::constraints::Constraint
BasePairConstraint()	core::scoring::constraints::BasePairConstraint
BasePairConstraint(Size const res1, Size const res2, core::chemical::rna::BaseEdge const edge1=core::chemical::rna::WATSON_CRICK, core::chemical::rna::BaseEdge const edge2=core::chemical::rna::WATSON_CRICK, core::chemical::rna::LW_BaseDoubletOrientation const orientation=core::chemical::rna::CIS)	core::scoring::constraints::BasePairConstraint
BasePairConstraint(BasePairConstraint const &src)	core::scoring::constraints::BasePairConstraint	protected
choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &)	core::scoring::constraints::Constraint	virtual
clone() const override	core::scoring::constraints::BasePairConstraint	virtual
core::scoring::constraints::Constraint::clone(func::FuncOP) const	core::scoring::constraints::Constraint	virtual
Constraint(ScoreType const &t)	core::scoring::constraints::Constraint
constraints() const	core::scoring::constraints::BasePairConstraint	inline
constraints_	core::scoring::constraints::BasePairConstraint	private
dist(core::scoring::func::XYZ_Func const &) const override	core::scoring::constraints::BasePairConstraint	virtual
core::scoring::constraints::Constraint::dist(core::pose::Pose const &) const	core::scoring::constraints::Constraint	virtual
edge1_	core::scoring::constraints::BasePairConstraint	private
edge2_	core::scoring::constraints::BasePairConstraint	private
effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &) const	core::scoring::constraints::Constraint	virtual
fill_f1_f2(AtomID const &atom, func::XYZ_Func const &xyz, Vector &F1, Vector &F2, EnergyMap const &weights) const override	core::scoring::constraints::BasePairConstraint	virtual
get_func() const	core::scoring::constraints::Constraint	virtual
init_subsidiary_constraints(pose::Pose const &pose)	core::scoring::constraints::BasePairConstraint
member_atoms_	core::scoring::constraints::BasePairConstraint	private
natoms() const override	core::scoring::constraints::BasePairConstraint	inlinevirtual
operator!=(Constraint const &other) const	core::scoring::constraints::Constraint
operator==(Constraint const &other) const override	core::scoring::constraints::BasePairConstraint	virtual
orientation_	core::scoring::constraints::BasePairConstraint	private
read_constraint(std::istream &, core::pose::Pose const &)	core::scoring::constraints::Constraint	virtual
read_data(std::istream &)	core::scoring::constraints::Constraint	virtual
read_def(std::istream &data, pose::Pose const &pose, func::FuncFactory const &func_factory) override	core::scoring::constraints::BasePairConstraint	virtual
remap_resid(core::id::SequenceMapping const &seqmap) const override	core::scoring::constraints::BasePairConstraint	virtual
remapped_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP smap) const override	core::scoring::constraints::BasePairConstraint	virtual
res1_	core::scoring::constraints::BasePairConstraint	private
res2_	core::scoring::constraints::BasePairConstraint	private
residues() const	core::scoring::constraints::Constraint	virtual
same_type_as_me(Constraint const &other) const override	core::scoring::constraints::BasePairConstraint	virtual
score(func::XYZ_Func const &xyz_func, EnergyMap const &weights, EnergyMap &emap) const override	core::scoring::constraints::BasePairConstraint	virtual
core::scoring::constraints::Constraint::score(pose::Pose const &pose) const	core::scoring::constraints::Constraint	virtual
core::scoring::constraints::Constraint::score(pose::Pose const &pose, EnergyMap const &weights) const	core::scoring::constraints::Constraint	virtual
score_type() const	core::scoring::constraints::Constraint	inline
set_constraints(ConstraintCOPs const &setting)	core::scoring::constraints::BasePairConstraint	inline
setup_for_derivatives(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const	core::scoring::constraints::Constraint	virtual
setup_for_scoring(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const	core::scoring::constraints::Constraint	virtual
show(std::ostream &out) const override	core::scoring::constraints::BasePairConstraint	virtual
show_def(std::ostream &out, pose::Pose const &) const override	core::scoring::constraints::BasePairConstraint	virtual
show_violations(std::ostream &out, pose::Pose const &pose, Size verbose_level, Real threshold=1.0) const override	core::scoring::constraints::BasePairConstraint	virtual
steal_def(pose::Pose const &)	core::scoring::constraints::Constraint	virtual
to_string() const	core::scoring::constraints::Constraint
type() const override	core::scoring::constraints::BasePairConstraint	virtual
~Constraint() override	core::scoring::constraints::Constraint