core::energy_methods::LinearChainbreakEnergy Member List

This is the complete list of members for core::energy_methods::LinearChainbreakEnergy, including all inherited members.

allowable_sequence_sep_	core::energy_methods::LinearChainbreakEnergy	private
atomic_interaction_cutoff() const	core::scoring::methods::WholeStructureEnergy	inlinevirtual
clone() const override	core::energy_methods::LinearChainbreakEnergy	inlinevirtual
defines_high_order_terms(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
do_score_dev(const core::conformation::Residue &lower_rsd, const core::conformation::Residue &upper_rsd, const core::Size nbb) const	core::energy_methods::LinearChainbreakEnergy	private
do_score_ovp(const core::conformation::Residue &lower_rsd, const core::conformation::Residue &upper_rsd, const core::Size nbb, const core::Size cutpoint, const core::pose::Pose &pose) const	core::energy_methods::LinearChainbreakEnergy	private
EnergyMethod(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, core::scoring::ScoreFunction const &sfxn, core::scoring::EnergyMap const &weights, Vector &F1, Vector &F2) const override	core::energy_methods::LinearChainbreakEnergy	virtual
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	virtual
finalize_after_minimizing(pose::Pose &pose) const	core::scoring::methods::EnergyMethod	virtual
finalize_total_energy(pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const override	core::energy_methods::LinearChainbreakEnergy	virtual
indicate_required_context_graphs(utility::vector1< bool > &) const override	core::energy_methods::LinearChainbreakEnergy	virtual
initialize(Size allowable_sequence_sep)	core::energy_methods::LinearChainbreakEnergy	private
LinearChainbreakEnergy()	core::energy_methods::LinearChainbreakEnergy
LinearChainbreakEnergy(Size allowable_sequence_sep)	core::energy_methods::LinearChainbreakEnergy	explicit
LinearChainbreakEnergy(const LinearChainbreakEnergy &)	core::energy_methods::LinearChainbreakEnergy
method_type() const override	core::scoring::methods::WholeStructureEnergy	virtual
minimize_in_whole_structure_context(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
operator=(const LinearChainbreakEnergy &)	core::energy_methods::LinearChainbreakEnergy
parent typedef	core::energy_methods::LinearChainbreakEnergy
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const	core::scoring::methods::EnergyMethod	virtual
previous_hash_value_	core::energy_methods::LinearChainbreakEnergy	mutableprivate
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	core::scoring::methods::EnergyMethod	virtual
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) const	core::scoring::methods::EnergyMethod	virtual
score_types() const	core::scoring::methods::EnergyMethod	inline
set_score_types(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod	protected
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_scoring(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const	core::scoring::methods::EnergyMethod	virtual
shortest_paths_	core::energy_methods::LinearChainbreakEnergy	mutableprivate
show_additional_info(std::ostream &, pose::Pose &, bool) const	core::scoring::methods::EnergyMethod	virtual
update_residue_for_packing(pose::Pose &, Size resid) const	core::scoring::methods::EnergyMethod	virtual
version() const override	core::energy_methods::LinearChainbreakEnergy	privatevirtual
WholeStructureEnergy(EnergyMethodCreatorOP)	core::scoring::methods::WholeStructureEnergy
~LinearChainbreakEnergy() override	core::energy_methods::LinearChainbreakEnergy
~WholeStructureEnergy() override	core::scoring::methods::WholeStructureEnergy	inline