| accept(Pose &pose, utility::vector1< core::Real > const &provisional_scores, protocols::moves::MCA const mca_status) | protocols::monte_carlo::GenericMonteCarloMover | |
| accept_counter() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| accepted_scores(core::Size const i) const | protocols::monte_carlo::GenericSimulatedAnnealer | inline |
| accepted_scores_ | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| adaptation_period(core::Size const a) | protocols::monte_carlo::GenericMonteCarloMover | inline |
| adaptation_period() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| adaptive() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| adaptive_movers(bool const a) | protocols::monte_carlo::GenericMonteCarloMover | inline |
| adaptive_movers() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| add_filter(FilterOP filter, bool const adaptive, Real const temp, String const &sample_type, bool rank_by=false) | protocols::monte_carlo::GenericMonteCarloMover | |
| add_trigger(const GenericMonteCarloMoverTrigger &trigger) | protocols::monte_carlo::GenericMonteCarloMover | |
| anneal_step_ | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| apply(Pose &pose) override | protocols::monte_carlo::GenericSimulatedAnnealer | virtual |
| apply_mover(core::pose::Pose &pose) | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| boltz_rank() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| boltzmann(Pose &pose) | protocols::monte_carlo::GenericMonteCarloMover | |
| boltzmann(Pose &pose, utility::vector1< core::Real > const &random_nums) | protocols::monte_carlo::GenericMonteCarloMover | virtual |
| boltzmann_result(core::pose::Pose &pose) | protocols::monte_carlo::GenericSimulatedAnnealer | |
| boltzmann_result(core::pose::Pose &pose, utility::vector1< core::Real > const &random_nums) | protocols::monte_carlo::GenericSimulatedAnnealer | |
| calc_boltz_score(utility::vector1< core::Real > const &scores) const | protocols::monte_carlo::GenericSimulatedAnnealer | |
| calc_temp_factor() const | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| calculate_standardized_scores(core::Size const filterid) const | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| calculate_temps() | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| checkpoint_exists() const | protocols::monte_carlo::GenericSimulatedAnnealer | |
| checkpoint_file(std::string const &check_file) | protocols::monte_carlo::GenericSimulatedAnnealer | inline |
| checkpoint_file_ | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::monte_carlo::GenericSimulatedAnnealer | virtual |
| create() | protocols::moves::Mover | virtual |
| create_tag(std::string const &suffix) const | protocols::monte_carlo::GenericSimulatedAnnealer | |
| current_score() const | protocols::monte_carlo::GenericMonteCarloMover | |
| current_trial_ | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| DataMap typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| define_composition_schema(utility::tag::XMLSchemaDefinition &) | protocols::monte_carlo::GenericMonteCarloMover | static |
| drift() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| eval_period_ | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| FilterOP typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| filters() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| fire_all_triggers(core::Size cycle, core::Size num_cycles, const Pose &pose, ScoreFunctionOP scoring) | protocols::monte_carlo::GenericMonteCarloMover | protected |
| fresh_instance() const override | protocols::monte_carlo::GenericSimulatedAnnealer | virtual |
| generate_random() const | protocols::monte_carlo::GenericMonteCarloMover | protected |
| GenericMonteCarloMover() | protocols::monte_carlo::GenericMonteCarloMover | |
| GenericMonteCarloMover(core::Size const maxtrials, core::Size const max_accepted_trials, core::Size const task_scaling, MoverOP const &mover, Real const temperature=0.0, String const &sample_type="low", bool const drift=true) | protocols::monte_carlo::GenericMonteCarloMover | |
| GenericMonteCarloMover(core::Size const maxtrials, core::Size const max_accepted_trials, core::Size const task_scaling, MoverOP const &mover, TaskFactoryOP factory_in, Real const temperature=0.0, String const &sample_type="low", bool const drift=true) | protocols::monte_carlo::GenericMonteCarloMover | |
| GenericSimulatedAnnealer() | protocols::monte_carlo::GenericSimulatedAnnealer | |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::monte_carlo::GenericSimulatedAnnealer | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| history_ | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize() | protocols::monte_carlo::GenericMonteCarloMover | |
| keep_checkpoint_file(bool const keep_checkpoint) | protocols::monte_carlo::GenericSimulatedAnnealer | inline |
| keep_checkpoint_file_ | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| keep_filters() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| last_accepted_pose() const | protocols::monte_carlo::GenericMonteCarloMover | |
| last_accepted_pose(core::pose::PoseOP pose) | protocols::monte_carlo::GenericMonteCarloMover | |
| last_accepted_score() const | protocols::monte_carlo::GenericMonteCarloMover | |
| last_accepted_score(core::Real const score) | protocols::monte_carlo::GenericMonteCarloMover | inline |
| last_accepted_scores() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| last_accepted_scores(utility::vector1< core::Real > const &scores) | protocols::monte_carlo::GenericMonteCarloMover | inline |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| last_tested_scores() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| load_checkpoint_file(core::pose::Pose &pose) | protocols::monte_carlo::GenericSimulatedAnnealer | |
| load_trial_number_from_checkpoint(core::pose::Pose &) | protocols::monte_carlo::GenericMonteCarloMover | |
| lowest_score() const | protocols::monte_carlo::GenericMonteCarloMover | |
| lowest_score(core::Real const score) | protocols::monte_carlo::GenericMonteCarloMover | inline |
| lowest_score_pose() const | protocols::monte_carlo::GenericMonteCarloMover | |
| lowest_score_pose(core::pose::PoseOP pose) | protocols::monte_carlo::GenericMonteCarloMover | |
| lowest_scores() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| lowest_scores(utility::vector1< core::Real > const &scores) | protocols::monte_carlo::GenericMonteCarloMover | inline |
| max_accepted_trials() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| maxtrials() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| mc_accpeted() const | protocols::monte_carlo::GenericMonteCarloMover | |
| mover() const override | protocols::monte_carlo::GenericMonteCarloMover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::monte_carlo::GenericSimulatedAnnealer | static |
| mover_stopping_condition() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| MoverApplyingMover(std::string const &name) | protocols::moves::MoverApplyingMover | inline |
| MoverApplyingMover(MoverApplyingMover const &)=default | protocols::moves::MoverApplyingMover | |
| MoverOP typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| name() | protocols::moves::Mover | inlinestatic |
| num_accepted_scores() const | protocols::monte_carlo::GenericSimulatedAnnealer | inline |
| num_designable(Pose &pose, PackerTaskOP &task) | protocols::monte_carlo::GenericMonteCarloMover | |
| num_rejections() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| num_rejections_ | protocols::monte_carlo::GenericMonteCarloMover | protected |
| num_triggers() const | protocols::monte_carlo::GenericMonteCarloMover | |
| PackerTask typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| PackerTaskCOP typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| PackerTaskOP typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) override | protocols::monte_carlo::GenericSimulatedAnnealer | virtual |
| parse_task_operations(TagCOP, basic::datacache::DataMap const &) | protocols::monte_carlo::GenericMonteCarloMover | virtual |
| ParsedProtocolOP typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| periodic_mover_ | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| Pose typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| PoseCOP typedef | protocols::moves::Mover | |
| PoseOP typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| preapply() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| progress_file() const | protocols::monte_carlo::GenericMonteCarloMover | inlineprotected |
| progress_file(std::string const &s) | protocols::monte_carlo::GenericMonteCarloMover | inlineprotected |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const override | protocols::monte_carlo::GenericMonteCarloMover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::monte_carlo::GenericSimulatedAnnealer | static |
| read_checkpoint_line(std::istream &is) const | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| Real typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| recompute_rank_scores() | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| recover_low(Pose &pose) | protocols::monte_carlo::GenericMonteCarloMover | |
| recover_low() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| remove_checkpoint_file() const | protocols::monte_carlo::GenericSimulatedAnnealer | |
| remove_trigger(core::Size trigger_id) | protocols::monte_carlo::GenericMonteCarloMover | |
| reset(Pose &pose) | protocols::monte_carlo::GenericSimulatedAnnealer | virtual |
| reset_baselines(bool const r) | protocols::monte_carlo::GenericMonteCarloMover | inline |
| reset_baselines() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| reset_status() | protocols::moves::Mover | |
| sample_types() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| save_checkpoint_file() const | protocols::monte_carlo::GenericSimulatedAnnealer | |
| save_trial_number_to_checkpoint(core::Size const i) const | protocols::monte_carlo::GenericMonteCarloMover | |
| saved_accept_file_name() const | protocols::monte_carlo::GenericMonteCarloMover | |
| saved_accept_file_name(std::string const ) | protocols::monte_carlo::GenericMonteCarloMover | |
| saved_trial_number_file() const | protocols::monte_carlo::GenericMonteCarloMover | |
| saved_trial_number_file(std::string const ) | protocols::monte_carlo::GenericMonteCarloMover | |
| scale_temperatures(core::Real const temp_factor) | protocols::monte_carlo::GenericSimulatedAnnealer | |
| score_function() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| score_pose(core::pose::Pose const &pose) const | protocols::monte_carlo::GenericSimulatedAnnealer | |
| ScoreFunction typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| ScoreFunctionOP typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| scorefxn() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| scoring(Pose &pose) | protocols::monte_carlo::GenericMonteCarloMover | protected |
| set_boltz_rank(bool const boltz_rank) | protocols::monte_carlo::GenericMonteCarloMover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_drift(bool const drift) | protocols::monte_carlo::GenericMonteCarloMover | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_keep_filters(bool const k) | protocols::monte_carlo::GenericMonteCarloMover | inline |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_max_accepted_trials(core::Size const n_max_accepted_trial) | protocols::monte_carlo::GenericMonteCarloMover | |
| set_maxtrials(core::Size const ntrial) | protocols::monte_carlo::GenericMonteCarloMover | |
| set_mc_accepted(moves::MCA const m) | protocols::monte_carlo::GenericMonteCarloMover | inlineprotected |
| set_mover(MoverOP mover) override | protocols::monte_carlo::GenericMonteCarloMover | virtual |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_preapply(bool const preapply=false) | protocols::monte_carlo::GenericMonteCarloMover | |
| set_recover_low(bool const recover_low) | protocols::monte_carlo::GenericMonteCarloMover | |
| set_sampletype(String const &type) | protocols::monte_carlo::GenericMonteCarloMover | |
| set_scorefxn(ScoreFunctionOP const &sfxn) | protocols::monte_carlo::GenericMonteCarloMover | |
| set_stop_sampling(bool const stop_sampling) | protocols::monte_carlo::GenericMonteCarloMover | |
| set_task_scaling(core::Size const scaling) | protocols::monte_carlo::GenericMonteCarloMover | |
| set_temperature(Real const temp) | protocols::monte_carlo::GenericMonteCarloMover | |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| show_counters(std::ostream &out) const | protocols::monte_carlo::GenericMonteCarloMover | |
| show_scores(std::ostream &out) const | protocols::monte_carlo::GenericMonteCarloMover | |
| Size typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| start_temperatures_ | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| stop_sampling() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| stopping_condition(protocols::filters::FilterOP filter) | protocols::monte_carlo::GenericMonteCarloMover | |
| stopping_condition() const | protocols::monte_carlo::GenericMonteCarloMover | |
| String typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| task_factory(core::pack::task::TaskFactoryOP tf) | protocols::monte_carlo::GenericMonteCarloMover | |
| task_factory() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| task_scaling() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| TaskFactoryOP typedef | protocols::monte_carlo::GenericMonteCarloMover | |
| temp_step_ | protocols::monte_carlo::GenericSimulatedAnnealer | private |
| temperatures() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| temperatures(utility::vector1< Real > const &temps) | protocols::monte_carlo::GenericMonteCarloMover | inline |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| trial_counter() const | protocols::monte_carlo::GenericMonteCarloMover | inline |
| trial_counter(core::Size const i) | protocols::monte_carlo::GenericMonteCarloMover | inline |
| trial_counter_ | protocols::monte_carlo::GenericMonteCarloMover | protected |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| ~GenericMonteCarloMover() override | protocols::monte_carlo::GenericMonteCarloMover | |
| ~GenericSimulatedAnnealer() override | protocols::monte_carlo::GenericSimulatedAnnealer | |
| ~MoverApplyingMover() override=default | protocols::moves::MoverApplyingMover | |
1.8.7