| allow_delete() const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | inline |
| allow_delete_ | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| already_instantiated_in_pose(core::pose::Pose const &pose, core::Size const &resnum_in_full_model_numbering) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| both_remnants_would_be_deleted(core::pose::Pose const &pose, utility::vector1< core::Size > const &partition1, utility::vector1< core::Size > const &partition2) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| check_for_input_domain_or_from_scratch(core::pose::Pose const &pose, utility::vector1< core::Size > const &partition_res) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| check_for_intramolecular_submotif_jump(core::pose::Pose const &pose, core::Size const &moving_res, core::Size const &attached_res) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| check_from_scratch(core::pose::Pose const &pose, utility::vector1< bool > const &partition_definition) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| choose_random() const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | inline |
| choose_random_ | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| clone() const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| figure_out_all_possible_moves(core::pose::Pose const &pose, bool const verbose=false) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| figure_out_already_docked(core::pose::Pose const &pose, std::map< std::pair< core::Size, core::Size >, bool > &already_docked) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| figure_out_attachment(core::Size const moving_res, core::Size const attached_res, core::pose::Pose const &pose) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| figure_out_first_res_in_pose(utility::vector1< core::Size > const &pose_domain_map) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| figure_out_from_scratch_delete_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| fill_denovo_moves(core::pose::Pose const &pose) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| fill_moves_for_other_poses(core::pose::Pose const &pose) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| fill_moves_for_pose(core::pose::Pose const &pose) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| fill_vary_loop_length_moves(core::pose::Pose const &pose) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| filter_add_submotif_moves_to_not_redock_domain(utility::vector1< StepWiseMove > &submotif_add_moves, core::pose::Pose const &pose) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| filter_complex_cycles(utility::vector1< StepWiseMove > &swa_moves, core::pose::Pose const &pose) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| filter_pose_order(utility::vector1< StepWiseMove > &swa_moves, core::pose::Pose const &pose) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| force_unique_moves() const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | inline |
| force_unique_moves_ | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_actual_moving_res(StepWiseMove const &swa_move, core::pose::Pose const &pose) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_add_or_delete_element(core::pose::Pose const &pose, StepWiseMove &swa_move) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| get_attachments(core::pose::Pose const &pose, core::Size const &moving_res) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| get_attachments(core::pose::Pose const &pose, MoveElement const &move_element) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| get_dock_domains(utility::vector1< core::Size > const &move_element, core::pose::Pose const &pose) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_docking_add_and_delete_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_docking_add_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_docking_delete_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_docking_split_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves, MoveType const move_type) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_from_scratch_add_and_delete_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_from_scratch_add_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_from_scratch_delete_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_internal_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves, MoveType const &move_type) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_intramolecular_add_and_delete_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_intramolecular_add_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_intramolecular_delete_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| get_intramolecular_split_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves, MoveType const move_type) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_partition_res(utility::vector1< bool > const &partition_definition, bool const setting) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_resample_internal_local_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| get_resample_internal_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| get_resample_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves, bool const save_moves=true) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| get_resample_terminal_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| get_submotif_add_moves(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_terminal_move_elements(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &swa_moves, MoveType const &move_type) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_unique_chains(core::pose::Pose const &pose) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| get_vary_loop_length_moves(core::pose::Pose const &pose, utility::vector1< StepWiseMove > &vary_loop_length_moves) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| is_addable_res(core::Size const n, core::pose::Pose const &pose) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| just_simple_cycles(StepWiseMove const &swa_move, core::pose::Pose const &pose, bool const verbose=false) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| normalize_probabilities(core::Size const start_idx=1, core::Size const final_idx=0, core::Real const desired_weight=1) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| options() const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | inline |
| options_ | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| ordered_move_from_partition(core::Size const actual_moving_res, core::Size const actual_attached_res, core::pose::Pose const &pose, MoveType const &move_type) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| output_moves() const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| partition_splits_an_input_domain(utility::vector1< core::Size > const &partition_definition, utility::vector1< core::Size > const &domain_map) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| partitions_split_a_submotif(core::pose::Pose const &pose, utility::vector1< core::Size > const &partition1, utility::vector1< core::Size > const &partition2) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| proposal_probabilities_ | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| proposal_probability(StepWiseMove const &swa_move) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| remnant_would_be_deleted(core::pose::Pose const &pose, utility::vector1< core::Size > const &partition) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| remove_from_consideration_first_multi_residue_move_element(utility::vector1< StepWiseMove > &swa_moves, bool remove_even_if_not_singlet) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| reverse_add_move(StepWiseMove const &swa_move, core::pose::Pose const &pose_after) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| reverse_add_submotif_move(StepWiseMove const &swa_move, core::pose::Pose const &pose_after) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| reverse_delete_move(StepWiseMove const &swa_move, core::pose::Pose const &pose_before, core::pose::Pose const &pose_after) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| reverse_move(StepWiseMove const &swa_move, core::pose::Pose const &pose_before, core::pose::Pose const &pose_after) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| reverse_resample_move(StepWiseMove const &swa_move, core::pose::Pose const &pose_after) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| save_moves(utility::vector1< StepWiseMove > const &moves, core::Real const total_weight=1, bool const clear_moves_before_saving=false) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| select_random_move(core::pose::Pose const &pose) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| set_allow_delete(bool const &setting) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | inline |
| set_choose_random(bool const &setting) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | inline |
| set_force_unique_moves(bool const &setting) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | inline |
| set_options(protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsCOP setting) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | inline |
| set_submotif_library(monte_carlo::submotif::SubMotifLibraryCOP setting) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | inline |
| share_chains(utility::vector1< core::Size > const ¤t_unique_chains, core::pose::Pose const &pose, core::Size const j_full) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| StepWiseMoveSelector() | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| StepWiseMoveSelector(options::StepWiseMoveSelectorOptionsCOP options) | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | |
| submotif_library() | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | inline |
| submotif_library_ | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| sum_probabilities(core::Size const start_idx=1, core::Size const final_idx=0) const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
| swa_moves() const | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | inline |
| swa_moves_ | protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector | private |
1.8.7