| add_span(Span const &span, core::Size offset=0) | core::conformation::membrane::SpanningTopology | |
| add_span(core::Size start, core::Size end, core::Size offset=0) | core::conformation::membrane::SpanningTopology | |
| concatenate_topology(SpanningTopology const &topo) | core::conformation::membrane::SpanningTopology | |
| create_from_spanfile(std::string spanfile, std::map< std::string, core::Size > pdb2pose_map, core::Size nres) | core::conformation::membrane::SpanningTopology | private |
| create_from_structure(utility::vector1< core::Real > res_z_coord, utility::vector1< core::Size > chainID, utility::vector1< char > secstruct, core::Real thickness=15) | core::conformation::membrane::SpanningTopology | private |
| fill_from_spanfile(std::string spanfile, std::map< std::string, core::Size > pdb2pose_map, core::Size total_residues=0) | core::conformation::membrane::SpanningTopology | |
| fill_from_structure(utility::vector1< core::Real > res_z_coord, utility::vector1< core::Size > chainID, utility::vector1< char > secstruct, Real thickness) | core::conformation::membrane::SpanningTopology | |
| get_spans() const | core::conformation::membrane::SpanningTopology | |
| in_span(core::Size residue) const | core::conformation::membrane::SpanningTopology | |
| is_valid() const | core::conformation::membrane::SpanningTopology | |
| nres_topo() const | core::conformation::membrane::SpanningTopology | |
| nres_topo_ | core::conformation::membrane::SpanningTopology | private |
| nspans() const | core::conformation::membrane::SpanningTopology | |
| operator=(SpanningTopology const &src) | core::conformation::membrane::SpanningTopology | |
| reorder_spans() | core::conformation::membrane::SpanningTopology | |
| show(std::ostream &output=std::cout) const | core::conformation::membrane::SpanningTopology | virtual |
| span(core::Size span_number) const | core::conformation::membrane::SpanningTopology | |
| spanning(utility::vector1< core::Real > res_z_coord, Span const &span) const | core::conformation::membrane::SpanningTopology | |
| SpanningTopology() | core::conformation::membrane::SpanningTopology | |
| SpanningTopology(std::string spanfile, std::map< std::string, core::Size > pdb2pose_map, core::Size total_residues=0) | core::conformation::membrane::SpanningTopology | |
| SpanningTopology(utility::vector1< core::Real > res_z_coord, utility::vector1< core::Size > chainID, utility::vector1< char > secstruct, Real thickness) | core::conformation::membrane::SpanningTopology | |
| SpanningTopology(SpanningTopology const &src) | core::conformation::membrane::SpanningTopology | |
| structure_based_ | core::conformation::membrane::SpanningTopology | private |
| topology_ | core::conformation::membrane::SpanningTopology | private |
| write_spanfile(std::string output_filename) const | core::conformation::membrane::SpanningTopology | |
| ~SpanningTopology() override | core::conformation::membrane::SpanningTopology | |