| align_reference_ | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| align_reference_pose(core::pose::Pose &reference, core::pose::Pose const &input_pose, core::id::SequenceMapping const &seq_map) const | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| ambiguous_hnq_ | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| apply(core::pose::Pose const &pose) const override | protocols::constraint_generator::CoordinateConstraintGenerator | virtual |
| bounded_ | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| bounded_width_ | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| ca_only_ | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| class_name() | protocols::constraint_generator::CoordinateConstraintGenerator | inlinestatic |
| protocols::constraint_generator::ConstraintGenerator::class_name() const | protocols::constraint_generator::ConstraintGenerator | |
| clone() const override | protocols::constraint_generator::CoordinateConstraintGenerator | virtual |
| ConstraintGenerator(std::string const &class_name) | protocols::constraint_generator::ConstraintGenerator | |
| CoordinateConstraintGenerator() | protocols::constraint_generator::CoordinateConstraintGenerator | |
| create_ambiguous_constraint(core::id::AtomID const &pose_atomid, core::conformation::Residue const &ref_rsd, core::id::AtomID const &root_atomid, std::pair< std::string, std::string > const &hnq_atoms) const | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| create_coordinate_constraint(core::id::AtomID const &pose_atomid, core::id::AtomID const &ref_atom, core::id::AtomID const &root_atom, core::conformation::Residue const &ref_rsd) const | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| create_function() const | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| create_residue_constraints(core::scoring::constraints::ConstraintCOPs &csts, core::id::AtomID const &root_atomid, core::conformation::Residue const &pose_rsd, core::conformation::Residue const &ref_rsd) const | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| generate_seqmap(core::pose::Pose const &pose) const | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| id() const | protocols::constraint_generator::ConstraintGenerator | |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) | protocols::constraint_generator::ConstraintGenerator | |
| parse_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::constraint_generator::CoordinateConstraintGenerator | protectedvirtual |
| prepare_constraint_target_pose(core::pose::Pose const &input, core::id::SequenceMapping const &seq_map) const | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| provide_citation_info(basic::citation_manager::CitationCollectionList &citations) const override | protocols::constraint_generator::CoordinateConstraintGenerator | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::constraint_generator::CoordinateConstraintGenerator | static |
| refpose_ | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| sd_ | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| select_constraint_target_pose(core::pose::Pose const &pose) const | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| selector_ | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| set_ambiguous_hnq(bool const ambiguous_hnq) | protocols::constraint_generator::CoordinateConstraintGenerator | |
| set_bounded(bool const bounded) | protocols::constraint_generator::CoordinateConstraintGenerator | |
| set_bounded_width(core::Real const bounded_width) | protocols::constraint_generator::CoordinateConstraintGenerator | |
| set_ca_only(bool const ca_only) | protocols::constraint_generator::CoordinateConstraintGenerator | |
| set_id(std::string const &id) | protocols::constraint_generator::ConstraintGenerator | |
| set_reference_pose(core::pose::PoseCOP refpose) | protocols::constraint_generator::CoordinateConstraintGenerator | |
| set_residue_selector(core::select::residue_selector::ResidueSelectorCOP selector) | protocols::constraint_generator::CoordinateConstraintGenerator | |
| set_sd(core::Real const sd) | protocols::constraint_generator::CoordinateConstraintGenerator | |
| set_sidechain(bool const sidechain) | protocols::constraint_generator::CoordinateConstraintGenerator | |
| sidechain_ | protocols::constraint_generator::CoordinateConstraintGenerator | private |
| ~ConstraintGenerator() override | protocols::constraint_generator::ConstraintGenerator | |
| ~CoordinateConstraintGenerator() override | protocols::constraint_generator::CoordinateConstraintGenerator | |
1.8.7