| apply(core::pose::Pose &, core::Size const ) override | protocols::stepwise::sampler::copy_dofs::CopyDofStepWiseSampler | virtual |
| protocols::stepwise::sampler::StepWiseSamplerSized::apply(core::pose::Pose &pose) override | protocols::stepwise::sampler::StepWiseSamplerSized | inlinevirtual |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| copy_dof_movers_ | protocols::stepwise::sampler::copy_dofs::CopyDofStepWiseSampler | protected |
| CopyDofStepWiseSampler(utility::vector1< core::pose::PoseOP > const &pose_list, std::map< core::Size, core::Size > const &res_map, core::pose::Pose const &starting_pose) | protocols::stepwise::sampler::copy_dofs::CopyDofStepWiseSampler | |
| CopyDofStepWiseSampler(utility::vector1< core::pose::PoseOP > const &pose_list, std::map< core::Size, core::Size > const &res_map) | protocols::stepwise::sampler::copy_dofs::CopyDofStepWiseSampler | |
| create() | protocols::moves::Mover | virtual |
| fast_forward() | protocols::stepwise::sampler::StepWiseSamplerSized | inlinevirtual |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_residue_at_origin() | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | |
| get_residue_at_origin_with_matching_type(core::conformation::Residue const &rsd_in) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| id() const | protocols::stepwise::sampler::StepWiseSamplerSized | inline |
| id_ | protocols::stepwise::sampler::StepWiseSamplerSized | protected |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init() override | protocols::stepwise::sampler::StepWiseSamplerSized | virtual |
| initialize_residues() | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | private |
| initialize_residues_for_type(core::conformation::Residue const &rsd_in) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | private |
| is_init() const | protocols::toolbox::SamplerPlusPlus | inlineprotected |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| not_end() const override | protocols::stepwise::sampler::StepWiseSamplerSized | virtual |
| operator++() override | protocols::stepwise::sampler::StepWiseSamplerSized | virtual |
| original_type_ | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | private |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| pose_list_ | protocols::stepwise::sampler::copy_dofs::CopyDofStepWiseSampler | protected |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| random() const | protocols::stepwise::sampler::StepWiseSampler | inlinevirtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| representative_seqpos() const | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | inline |
| representative_seqpos_ | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | private |
| reset() override | protocols::stepwise::sampler::StepWiseSamplerSized | virtual |
| reset_status() | protocols::moves::Mover | |
| ResidueAlternativeStepWiseSampler(ResidueAlternativeSet const &residue_alternative_set, core::pose::Pose const &starting_pose) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | |
| ResidueAlternativeStepWiseSampler(ResidueAlternativeSet const &residue_alternative_set) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | |
| ResidueAlternativeStepWiseSampler(utility::vector1< core::pose::PoseOP > const &pose_list, std::map< core::Size, core::Size > const &res_map, core::Size const representative_seqpos, core::pose::Pose const &starting_pose) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | |
| ResidueAlternativeStepWiseSampler(utility::vector1< core::pose::PoseOP > const &pose_list, std::map< core::Size, core::Size > const &res_map, core::Size const representative_seqpos) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | |
| ResidueAlternativeStepWiseSampler(utility::vector1< core::pose::PoseOP > const &pose_list, core::Size const seqpos) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | |
| residues_for_each_type_ | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | private |
| SamplerPlusPlus() | protocols::toolbox::SamplerPlusPlus | inline |
| set_and_reinit(T ¶ms, T const &setting) | protocols::toolbox::SamplerPlusPlus | inlineprotected |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_id(core::Size const setting) | protocols::stepwise::sampler::StepWiseSamplerSized | inlinevirtual |
| set_init(bool const setting) | protocols::toolbox::SamplerPlusPlus | inlineprotected |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_random(bool const setting) | protocols::stepwise::sampler::StepWiseSampler | inlinevirtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &out, core::Size const indent=0) const override | protocols::stepwise::sampler::StepWiseSamplerSized | inlinevirtual |
| protocols::moves::Mover::show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| simple_res_map(core::Size const i) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | private |
| size() const override | protocols::stepwise::sampler::copy_dofs::CopyDofStepWiseSampler | inlinevirtual |
| StepWiseSampler() | protocols::stepwise::sampler::StepWiseSampler | inline |
| StepWiseSamplerSized() | protocols::stepwise::sampler::StepWiseSamplerSized | |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| TorsionList typedef | protocols::toolbox::SamplerPlusPlus | |
| type() const override | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | inlinevirtual |
| protocols::moves::Mover::type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~ResidueAlternativeStepWiseSampler() override | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler | |
| ~SamplerPlusPlus() override | protocols::toolbox::SamplerPlusPlus | inline |
| ~StepWiseSampler() override | protocols::stepwise::sampler::StepWiseSampler | inline |
| ~StepWiseSamplerSized() override | protocols::stepwise::sampler::StepWiseSamplerSized | |
1.8.7